| Matrix_138 | RRTF1 | Not available | Upstream | -47 |
| Matrix_206 | CUC1;ANAC100 | Not available | Upstream | -4 |
| Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -47 |
| Matrix_288 | RAP2.3 | Not available | Upstream | -47 |
| Matrix_322 | NST3;ANAC015;BRN2 | Not available | Upstream | -5 |
| Matrix_363 | RAP2.3 | Not available | Upstream | -47 |
| Matrix_41 | anac058 | Not available | Upstream | -4 |
| Matrix_475 | AT5G64220 | Not available | Upstream | -45 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -47 |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -44 |
| | | Upstream | -230 |
| Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -162 |
| Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -1200 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -175 |
| | | Upstream | -177 |
| | | Upstream | -179 |
| Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -101 |
| | | Upstream | -164 |
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