View conserved binding sites


Gene
GM01G00820
Description
CCCH domain-containing protein 49
Alias
Glyma01g00820;Glyma01g00820.1;PAC:26324238;Glyma01g00820.1
Binding siteNameDescriptionLocationPosition
Matrix_113ABI5Not availableUpstream-282
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-279
Upstream-280
Upstream-995
Matrix_129ABF1Not availableUpstream-283
Matrix_134ABF1Not availableUpstream-283
Matrix_141AT3G25990Not availableUpstream-92
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-279
Upstream-360
Upstream-986
Matrix_156POC1Not availableUpstream-282
Matrix_165KNAT1Not availableUpstream-229
Matrix_192FHY3/FAR1Not availableUpstream-280
Matrix_24POC1Not availableUpstream-279
Upstream-360
Upstream-986
Matrix_247PIF3Not availableUpstream-283
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-228
Matrix_264ATAREB1Not availableUpstream-280
Matrix_269FHY3/FAR1Not availableDownstream1096
Matrix_296GBF2Not availableUpstream-283
Matrix_300bZIP68;bZIP16Not availableUpstream-283
Matrix_301PIL5Not availableUpstream-284
Matrix_332SPT;ALCNot availableUpstream-283
Matrix_345POC1Not availableUpstream-279
Upstream-280
Upstream-995
Matrix_356PRR5Not availableUpstream-280
Matrix_401MYB55Not availableUpstream-113
Matrix_403BZR1Not availableUpstream-281
Matrix_443AGL15Not availableUpstream-281
Matrix_455MYB111Not availableUpstream-100
Matrix_47AtMYB77Not availableUpstream-109
Matrix_55PIF3Not availableUpstream-282
Matrix_68AtMYB77More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84Upstream-109
Matrix_7PIF4Not availableUpstream-283
Matrix_74LFYNot availableUpstream-34
Matrix_77PRR5Not availableUpstream-281
Matrix_84AtGRF6Not availableUpstream-55
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-88
Upstream-122
Upstream-173
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-7
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-36
Upstream-193
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-284
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-283
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-89
Upstream-110
Upstream-172
Motif_244ABRE-like binding site motifNot availableUpstream-256
Upstream-282
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-97
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream1144
Downstream1141
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-101
Upstream-117
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-205
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-94
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-256
Upstream-284
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionUpstream-77
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-39
Motif_419MYB4 binding site motifNot availableUpstream-97
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-283
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-187
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-49
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-685
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-39
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-12
Upstream-13
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-34
Upstream-95
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-282
Motif_662MYB26PSMyb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragonUpstream-97
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-97
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-39
Motif_683AtMYB2 BS in RD22Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expressionUpstream-95
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-120