View conserved binding sites


Gene
GM00G01290
Description
Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic
Alias
Glyma0273s00200;Glyma0273s00200.1;PAC:26325935;Glyma0273s00200.1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-556
Upstream-557
Matrix_109GBF3Not availableUpstream-556
Matrix_113ABI5Not availableUpstream-556
Upstream-557
Upstream-558
Upstream-559
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-554
Upstream-555
Matrix_122ABF1;AREB2Not availableUpstream-556
Upstream-557
Matrix_129ABF1Not availableUpstream-557
Upstream-558
Matrix_145GBF4;AT5G44080Not availableUpstream-558
Upstream-559
Matrix_156POC1Not availableUpstream-556
Upstream-557
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-557
Upstream-558
Matrix_214AP1Not availableUpstream-555
Matrix_233MYC3Not availableUpstream-558
Upstream-559
Matrix_24POC1Not availableUpstream-553
Matrix_247PIF3Not availableUpstream-557
Upstream-558
Matrix_264ATAREB1Not availableUpstream-557
Upstream-558
Matrix_301PIL5Not availableUpstream-552
Upstream-553
Matrix_331GBF1Not availableUpstream-556
Matrix_332SPT;ALCNot availableUpstream-557
Upstream-558
Upstream-559
Matrix_345POC1Not availableUpstream-554
Upstream-555
Matrix_359FLCNot availableUpstream-555
Upstream-556
Matrix_367REM1Not availableUpstream-1605
Matrix_39AP1Not availableUpstream-365
Matrix_403BZR1Not availableUpstream-555
Upstream-556
Matrix_443AGL15Not availableUpstream-555
Upstream-556
Matrix_48PINot availableUpstream-367
Matrix_53MYC3Not availableUpstream-559
Upstream-560
Matrix_55PIF3Not availableUpstream-556
Upstream-557
Matrix_57WIN1;SHN3;SHN2Not availableIntron464
Matrix_60AT1G01260;AT5G57150Not availableUpstream-558
Upstream-559
Matrix_64PIF5Not availableUpstream-558
Upstream-559
Matrix_65POC1;PIL1Not availableUpstream-558
Upstream-559
Matrix_77PRR5Not availableUpstream-555
Upstream-556
Matrix_79FUS3Not availableDownstream1818
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Upstream-1623
Upstream-1627
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-559
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneUpstream-36
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1536
Upstream-559
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-558
Upstream-559
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-1624
Upstream-1628
Upstream-1632
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-559
Upstream-592
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-1623
Upstream-1627
Upstream-1631
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-511
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Downstream1538
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-558
Upstream-559
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-558
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneUpstream-752
Upstream-890
Upstream-1109
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-499
Upstream-500