Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -556 |
| | | Upstream | -557 |
Matrix_109 | GBF3 | Not available | Upstream | -556 |
Matrix_113 | ABI5 | Not available | Upstream | -556 |
| | | Upstream | -557 |
| | | Upstream | -558 |
| | | Upstream | -559 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -554 |
| | | Upstream | -555 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -556 |
| | | Upstream | -557 |
Matrix_129 | ABF1 | Not available | Upstream | -557 |
| | | Upstream | -558 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -558 |
| | | Upstream | -559 |
Matrix_156 | POC1 | Not available | Upstream | -556 |
| | | Upstream | -557 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -557 |
| | | Upstream | -558 |
Matrix_214 | AP1 | Not available | Upstream | -555 |
Matrix_233 | MYC3 | Not available | Upstream | -558 |
| | | Upstream | -559 |
Matrix_24 | POC1 | Not available | Upstream | -553 |
Matrix_247 | PIF3 | Not available | Upstream | -557 |
| | | Upstream | -558 |
Matrix_264 | ATAREB1 | Not available | Upstream | -557 |
| | | Upstream | -558 |
Matrix_301 | PIL5 | Not available | Upstream | -552 |
| | | Upstream | -553 |
Matrix_331 | GBF1 | Not available | Upstream | -556 |
Matrix_332 | SPT;ALC | Not available | Upstream | -557 |
| | | Upstream | -558 |
| | | Upstream | -559 |
Matrix_345 | POC1 | Not available | Upstream | -554 |
| | | Upstream | -555 |
Matrix_359 | FLC | Not available | Upstream | -555 |
| | | Upstream | -556 |
Matrix_367 | REM1 | Not available | Upstream | -1605 |
Matrix_39 | AP1 | Not available | Upstream | -365 |
Matrix_403 | BZR1 | Not available | Upstream | -555 |
| | | Upstream | -556 |
Matrix_443 | AGL15 | Not available | Upstream | -555 |
| | | Upstream | -556 |
Matrix_48 | PI | Not available | Upstream | -367 |
Matrix_53 | MYC3 | Not available | Upstream | -559 |
| | | Upstream | -560 |
Matrix_55 | PIF3 | Not available | Upstream | -556 |
| | | Upstream | -557 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Intron | 464 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -558 |
| | | Upstream | -559 |
Matrix_64 | PIF5 | Not available | Upstream | -558 |
| | | Upstream | -559 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -558 |
| | | Upstream | -559 |
Matrix_77 | PRR5 | Not available | Upstream | -555 |
| | | Upstream | -556 |
Matrix_79 | FUS3 | Not available | Downstream | 1818 |
Motif_153 | MARABOX1 | A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR) | Upstream | -1623 |
| | | Upstream | -1627 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -559 |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | Upstream | -36 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 1536 |
| | | Upstream | -559 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -558 |
| | | Upstream | -559 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -1624 |
| | | Upstream | -1628 |
| | | Upstream | -1632 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -559 |
| | | Upstream | -592 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -1623 |
| | | Upstream | -1627 |
| | | Upstream | -1631 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -511 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Downstream | 1538 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -558 |
| | | Upstream | -559 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -558 |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | Upstream | -752 |
| | | Upstream | -890 |
| | | Upstream | -1109 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -499 |
| | | Upstream | -500 |