View conserved binding sites


Gene
GM00G00140
Description
Histone H1.0
Alias
Glyma0856s00200;Glyma0856s00200.2;PAC:26287339;Glyma0856s00200.2
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-306
Matrix_166TGA4Not availableUpstream-304
Matrix_278AtbZIP44Not availableUpstream-306
Matrix_331GBF1Not availableUpstream-306
Matrix_438AtbZIP63Not availableUpstream-305
Matrix_456bZIP60Not availableUpstream-305
Matrix_48PINot availableUpstream-140
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-304
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-333
Motif_15AMYBOX2amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-75
Motif_244ABRE-like binding site motifNot availableUpstream-305
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-75
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-84
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-303
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-304
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-304
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-302
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-302
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-75
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-134
Upstream-91