PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Gene: EG0011G15760
Description: protein ligase RHF2A
Alias: Eucgr.K01913;Eucgr.K01913.2;PAC:23603422;Eucgr.K01913.2

Binding site	Name	Description	Location	Position
Motif_171	TCP binding consensus	found enriched in peaks in chip-seq data for SEP3	Upstream	-21
Motif_192	BOXLCOREDCPAL	Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro	Upstream	-213
			Upstream	-209
Motif_221	MYBCORE	Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis	Upstream	-266
Motif_254	MYB46;MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	Upstream	-213
			Upstream	-209
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	Upstream	-201
Motif_292	MYBPZM	Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes	Upstream	-212
			Upstream	-208
Motif_391	REALPHALGLHCB21	REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation	Upstream	-214
			Upstream	-210
Motif_419	MYB4 binding site motif	Not available	Upstream	-213
			Upstream	-209
Motif_426	MYB58;MYB63	MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis	Upstream	-213
			Upstream	-209
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	Upstream	-258
Motif_666	MYB binding site promoter	A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes	Upstream	-214
			Upstream	-210
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	Upstream	-292
			Upstream	-290
			Upstream	-142
			Upstream	-140
			Upstream	-138
Motif_98	SEF3MOTIFGM	SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4	Upstream	-206