View conserved binding sites


Gene
EG0011G15410
Description
Sphingosine-1-phosphate phosphatase 1
Alias
Eucgr.K01870;Eucgr.K01870.1;PAC:23603373;Eucgr.K01870.1
Binding siteNameDescriptionLocationPosition
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-7
Matrix_414AGL15Not availableUpstream-17
Upstream-18
Matrix_48PINot availableUpstream-10
Upstream-11
Upstream-31
Upstream-32
Upstream-151
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-35
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Upstream-324
Upstream-328
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-339
Upstream-342
Motif_285HDZIP2ATATHB2Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own geneUpstream-337
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-321
Upstream-325
Upstream-329
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-324
Upstream-328
Upstream-332
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-35
Upstream-37
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-334
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-621
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-621
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-14
Upstream-16
Upstream-35
Upstream-37
Upstream-39
Upstream-41
Upstream-43
Upstream-45
Upstream-47