| Matrix_412 | GL1 | Not available | Intron | 16386 |
| | | Intron | 11182 |
| | | Intron | 4261 |
| Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -174 |
| | | Upstream | -444 |
| | | Upstream | -446 |
| | | Upstream | -552 |
| | | Upstream | -554 |
| | | Upstream | -556 |
| | | Upstream | -558 |
| | | Upstream | -560 |
| | | Upstream | -562 |
| Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Upstream | -23 |
| Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Upstream | -22 |
| | | Upstream | -26 |
| Motif_419 | MYB4 binding site motif | Not available | Upstream | -23 |
| Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -560 |
| | | Upstream | -562 |
| | | Upstream | -564 |
| Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -23 |
| | | Upstream | -27 |
| Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -23 |
| | | Upstream | -27 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -175 |
| | | Upstream | -177 |
| | | Upstream | -179 |
| | | Upstream | -181 |
| | | Upstream | -183 |
| | | Upstream | -443 |
| | | Upstream | -445 |
| | | Upstream | -447 |
| | | Upstream | -449 |
| | | Upstream | -451 |
| | | Upstream | -453 |
| | | Upstream | -455 |
| | | Upstream | -551 |
| | | Upstream | -553 |
| | | Upstream | -555 |
| | | Upstream | -557 |
| | | Upstream | -559 |
| | | Upstream | -561 |
| | | Upstream | -563 |
| | | Upstream | -565 |
| | | Upstream | -567 |
| | | Upstream | -569 |
| | | Upstream | -571 |
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