View conserved binding sites


Gene
EG0006G35100
Description
b binding protein of LHCII type I, chloroplastic
Alias
Eucgr.F04099;Eucgr.F04099.1;PAC:23585349;Eucgr.F04099.1
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-207
Upstream-208
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-207
Upstream-208
Matrix_296GBF2Not availableUpstream-207
Upstream-208
Matrix_300bZIP68;bZIP16Not availableUpstream-207
Matrix_331GBF1Not availableUpstream-207
Upstream-208
Matrix_438AtbZIP63Not availableUpstream-204
Upstream-205
Matrix_456bZIP60Not availableUpstream-206
Upstream-207
Matrix_494OBP4Not availableUpstream-267
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-205
Upstream-206
Matrix_6AT1G70000Not availableUpstream-265
Upstream-266
Matrix_97APRR2Not availableUpstream-169
Upstream-170
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-109
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-119
Upstream-173
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-267
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-143
Upstream-176
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-271
Motif_244ABRE-like binding site motifNot availableUpstream-208
Upstream-228
Motif_256RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsUpstream-109
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityUpstream-188
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-108
Upstream-208
Upstream-228
Motif_349QARBNEXTAQAR (quantitative activator region) in promoter region of Brassica napus extA extensin geneUpstream-271
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-207
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-207
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-207
Motif_497ARE1ARE (antioxidant response element); antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genesUpstream-205
Motif_517LEAFYATAGTarget sequence of LEAFY in the intron of AGAMOUS gene in ArabidopsisUpstream-116
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-209
Upstream-229
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-271
Motif_573HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-206
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-207
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-222
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-209
Upstream-229
Upstream-272
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-266
Motif_638ABRE binding site motifNot availableUpstream-228
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-229
Motif_648ARE2ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1Upstream-206
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-207
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-272
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-172