View conserved binding sites


Gene
EG0006G15110
Description
peptidase N-terminal domain and RING finger protein 3
Alias
Eucgr.F01853;Eucgr.F01853.1;PAC:23582599;Eucgr.F01853.1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-461
Matrix_109GBF3Not availableUpstream-461
Upstream-463
Matrix_113ABI5Not availableUpstream-461
Upstream-463
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-440
Upstream-458
Upstream-459
Matrix_122ABF1;AREB2Not availableUpstream-461
Matrix_129ABF1Not availableUpstream-462
Matrix_14ZCW32;AT5G62610Not availableUpstream-445
Upstream-462
Upstream-463
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-458
Matrix_156POC1Not availableUpstream-445
Upstream-461
Upstream-463
Matrix_192FHY3/FAR1Not availableUpstream-459
Upstream-463
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-462
Matrix_214AP1Not availableUpstream-442
Upstream-460
Matrix_24POC1Not availableUpstream-458
Matrix_247PIF3Not availableUpstream-444
Upstream-462
Matrix_296GBF2Not availableUpstream-462
Upstream-463
Matrix_300bZIP68;bZIP16Not availableUpstream-462
Upstream-463
Matrix_301PIL5Not availableUpstream-457
Upstream-463
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-442
Matrix_331GBF1Not availableUpstream-461
Upstream-463
Matrix_332SPT;ALCNot availableUpstream-445
Upstream-462
Upstream-463
Matrix_345POC1Not availableUpstream-440
Upstream-458
Upstream-459
Matrix_356PRR5Not availableUpstream-455
Upstream-459
Matrix_389ILR3Not availableUpstream-462
Matrix_403BZR1Not availableUpstream-460
Matrix_443AGL15Not availableUpstream-460
Matrix_448ATERF6Not availableUpstream-27
Matrix_55PIF3Not availableUpstream-443
Upstream-461
Matrix_7PIF4Not availableUpstream-462
Upstream-464
Matrix_77PRR5Not availableUpstream-460
Upstream-461
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Upstream-352
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-355
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-445
Upstream-463
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-131
Upstream-132
Upstream-444
Upstream-445
Upstream-462
Upstream-463
Motif_244ABRE-like binding site motifNot availableUpstream-443
Upstream-461
Upstream-463
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-297
Upstream-300
Upstream-303
Upstream-306
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-353
Upstream-1637
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-445
Upstream-463
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-537
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-444
Upstream-445
Upstream-462
Upstream-463
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-444
Upstream-462
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseUpstream-353
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-461
Upstream-464
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-460
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-537
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-461
Upstream-464
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-354
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-552
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-537
Motif_684MNF1ZMPPC1MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light inductionUpstream-531