View conserved binding sites


Gene
EG0006G13090
Description
homeotic protein PMADS 1
Alias
Eucgr.F01615;Eucgr.F01615.1;PAC:23582332;Eucgr.F01615.1
Binding siteNameDescriptionLocationPosition
Matrix_222AGL2DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formationUpstream-158
Matrix_386AGL1DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formationUpstream-158
Matrix_396AP3Not availableIntron260
Intron201
Matrix_43AGNot availableUpstream-158
Matrix_445AGNot availableUpstream-158
Matrix_98AGIsolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUSUpstream-158
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-292
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-50
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-742
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-1922
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-12
Upstream-14
Upstream-16
Upstream-18
Upstream-20
Upstream-22
Upstream-24
Upstream-26
Upstream-28
Upstream-50
Upstream-52
Upstream-54
Upstream-56
Upstream-109