Matrix_134 | ABF1 | Not available | Intron | 9976 |
| | | Intron | 9975 |
| | | Intron | 9974 |
| | | Intron | 9973 |
| | | Intron | 9972 |
| | | Intron | 9971 |
| | | Intron | 9970 |
Matrix_352 | LEC2 | Not available | Intron | 9394 |
| | | Intron | 5320 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Intron | 9981 |
| | | Intron | 9980 |
| | | Intron | 9979 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Intron | 3230 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Intron | 9976 |
| | | Intron | 9975 |
| | | Intron | 9974 |
| | | Intron | 9973 |
| | | Intron | 9972 |
| | | Upstream | -200 |
| | | Upstream | -201 |
| | | Upstream | -202 |
| | | Upstream | -203 |
| | | Upstream | -204 |
| | | Upstream | -205 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Intron | 9967 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Intron | 9967 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 3231 |
| | | Intron | 3229 |
| | | Intron | 3227 |
| | | Intron | 3225 |
| | | Intron | 3223 |
Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -129 |