PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Gene: EG0005G07400
Description: kinase IV, chloroplastic/mitochondrial
Alias: Eucgr.E00871;Eucgr.E00871.1;PAC:23577597;Eucgr.E00871.1

Binding site	Name	Description	Location	Position
Matrix_134	ABF1	Not available	Intron	1170
			Intron	1206
			Intron	1215
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	Intron	1171
Matrix_396	AP3	Not available	Upstream	-195
Motif_129	GAGAGMGSA1	GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA	Upstream	-134
			Upstream	-132
Motif_182	MYB2CONSENSUSAT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22	Intron	1192
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	Upstream	-235
Motif_194	EBOXBNNAPA	E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1	Intron	1192
Motif_221	MYBCORE	Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis	Intron	1174
			Intron	1192
Motif_336	MYBMOUSE	Binding site for mouse c-myb protein	Intron	1192
Motif_348	WBBOXPCWRKY1	WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis	Upstream	-188
Motif_358	UP2ATMSD	Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	Upstream	-193
Motif_392	PALBOXAPC	Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L	Upstream	-234
Motif_441	GAGA8HVBKN3	GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR	Upstream	-134
			Upstream	-132
			Upstream	-130
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	Intron	1218
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	Upstream	-134
			Upstream	-132
			Upstream	-130
			Upstream	-128
			Upstream	-126
			Upstream	-124
			Upstream	-122