View conserved binding sites


Gene
EG0005G05930
Description
Putative RING-H2 finger protein ATL36
Alias
Eucgr.E00679;Eucgr.E00679.1;PAC:23577418;Eucgr.E00679.1
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-321
Upstream-322
Matrix_113ABI5Not availableUpstream-321
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-319
Matrix_129ABF1Not availableUpstream-322
Matrix_14ZCW32;AT5G62610Not availableUpstream-322
Upstream-323
Matrix_144AT5G08330;AT5G23280Not availableUpstream-250
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-319
Matrix_156POC1Not availableUpstream-321
Matrix_192FHY3/FAR1Not availableUpstream-319
Matrix_196TCP20;AT5G41030Not availableUpstream-247
Upstream-248
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-322
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-319
Matrix_232TCP23Not availableUpstream-248
Matrix_24POC1Not availableUpstream-319
Matrix_247PIF3Not availableUpstream-322
Upstream-323
Matrix_296GBF2Not availableUpstream-322
Upstream-323
Matrix_297TCP15Not availableUpstream-248
Upstream-249
Matrix_300bZIP68;bZIP16Not availableUpstream-322
Upstream-323
Matrix_301PIL5Not availableUpstream-317
Matrix_331GBF1Not availableUpstream-321
Upstream-322
Matrix_332SPT;ALCNot availableUpstream-322
Upstream-323
Matrix_334AT3G23230Not availableUpstream-81
Matrix_345POC1Not availableUpstream-319
Upstream-320
Matrix_348AT5G51910Not availableUpstream-249
Upstream-250
Matrix_42AT2G45680Not availableUpstream-249
Matrix_455MYB111Not availableUpstream-243
Matrix_7PIF4Not availableUpstream-322
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-255
Upstream-256
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-324
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-244
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-324
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-322
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-323
Upstream-324
Motif_244ABRE-like binding site motifNot availableUpstream-322
Upstream-994
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-244
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-322
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-244
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-324
Motif_400ABREAZMRAB28ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissuesUpstream-322
Motif_419MYB4 binding site motifNot availableUpstream-244
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-244
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-323
Upstream-324
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-323
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-244
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-322
Motif_61PALBOXLPCBox L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activationUpstream-244
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-322
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-307
Motif_636AMMORESVDCRNIA1Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activationUpstream-253
Motif_638ABRE binding site motifNot availableUpstream-322
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-321
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-244