Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -519 |
| | | Upstream | -521 |
| | | Upstream | -523 |
| | | Upstream | -525 |
| | | Upstream | -527 |
| | | Upstream | -529 |
| | | Upstream | -531 |
| | | Upstream | -533 |
| | | Upstream | -535 |
| | | Upstream | -537 |
| | | Upstream | -539 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -293 |
| | | Upstream | -624 |
Motif_33 | ACGTCBOX | C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site | Upstream | -285 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -295 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -293 |
Motif_425 | ANAC013;ANAC016;ANAC017;ANAC053;ANAC078 | A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thaliana | Upstream | -281 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -187 |
| | | Upstream | -517 |
| | | Upstream | -519 |
| | | Upstream | -521 |
| | | Upstream | -523 |
| | | Upstream | -525 |
| | | Upstream | -527 |
| | | Upstream | -529 |
| | | Upstream | -531 |
| | | Upstream | -533 |
| | | Upstream | -535 |
| | | Upstream | -537 |
| | | Upstream | -539 |
| | | Upstream | -541 |
| | | Upstream | -867 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -286 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -1706 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -286 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -296 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -299 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -293 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -188 |
| | | Upstream | -190 |
| | | Upstream | -192 |
| | | Upstream | -194 |
| | | Upstream | -518 |
| | | Upstream | -520 |
| | | Upstream | -522 |
| | | Upstream | -524 |
| | | Upstream | -526 |
| | | Upstream | -528 |
| | | Upstream | -530 |
| | | Upstream | -532 |
| | | Upstream | -534 |
| | | Upstream | -536 |
| | | Upstream | -538 |
| | | Upstream | -540 |
| | | Upstream | -542 |
| | | Upstream | -544 |
| | | Upstream | -546 |
| | | Upstream | -548 |
| | | Upstream | -866 |
| | | Upstream | -868 |
| | | Upstream | -870 |
| | | Upstream | -872 |
| | | Upstream | -874 |