Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -182 |
| | | Upstream | -184 |
| | | Upstream | -186 |
| | | Upstream | -188 |
| | | Upstream | -190 |
| | | Upstream | -192 |
| | | Upstream | -194 |
| | | Upstream | -196 |
| | | Upstream | -198 |
| | | Upstream | -200 |
| | | Upstream | -202 |
| | | Upstream | -204 |
| | | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -210 |
| | | Upstream | -212 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -380 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -345 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -310 |
Motif_425 | ANAC013;ANAC016;ANAC017;ANAC053;ANAC078 | A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thaliana | Upstream | -313 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -182 |
| | | Upstream | -184 |
| | | Upstream | -186 |
| | | Upstream | -188 |
| | | Upstream | -190 |
| | | Upstream | -192 |
| | | Upstream | -194 |
| | | Upstream | -196 |
| | | Upstream | -198 |
| | | Upstream | -200 |
| | | Upstream | -202 |
| | | Upstream | -204 |
| | | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -210 |
| | | Upstream | -212 |
| | | Upstream | -214 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -295 |
| | | Upstream | -296 |
| | | Upstream | -297 |
| | | Upstream | -298 |
| | | Upstream | -299 |
| | | Upstream | -300 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -181 |
| | | Upstream | -183 |
| | | Upstream | -185 |
| | | Upstream | -187 |
| | | Upstream | -189 |
| | | Upstream | -191 |
| | | Upstream | -193 |
| | | Upstream | -195 |
| | | Upstream | -197 |
| | | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -203 |
| | | Upstream | -205 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -211 |
| | | Upstream | -213 |
| | | Upstream | -215 |
| | | Upstream | -217 |
| | | Upstream | -219 |
| | | Upstream | -221 |