View conserved binding sites


Gene
EG0002G33240
Description
Transcription factor
Alias
Eucgr.B03947;Eucgr.B03947.1;PAC:23569388;Eucgr.B03947.1
Binding siteNameDescriptionLocationPosition
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-958
Matrix_48PINot availableIntron1386
Intron819
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-61
Upstream-63
Upstream-65
Upstream-218
Upstream-220
Upstream-222
Upstream-224
Upstream-872
Upstream-874
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-148
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-175
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-61
Upstream-63
Upstream-65
Upstream-67
Upstream-218
Upstream-220
Upstream-222
Upstream-224
Upstream-226
Upstream-872
Upstream-874
Upstream-876
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-147
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-61
Upstream-63
Upstream-65
Upstream-67
Upstream-69
Upstream-71
Upstream-73
Upstream-218
Upstream-220
Upstream-222
Upstream-224
Upstream-226
Upstream-228
Upstream-230
Upstream-232
Upstream-872
Upstream-874
Upstream-876
Upstream-878
Upstream-880
Upstream-882