Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -958 |
Matrix_48 | PI | Not available | Intron | 1386 |
| | | Intron | 819 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -61 |
| | | Upstream | -63 |
| | | Upstream | -65 |
| | | Upstream | -218 |
| | | Upstream | -220 |
| | | Upstream | -222 |
| | | Upstream | -224 |
| | | Upstream | -872 |
| | | Upstream | -874 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -148 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -175 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -61 |
| | | Upstream | -63 |
| | | Upstream | -65 |
| | | Upstream | -67 |
| | | Upstream | -218 |
| | | Upstream | -220 |
| | | Upstream | -222 |
| | | Upstream | -224 |
| | | Upstream | -226 |
| | | Upstream | -872 |
| | | Upstream | -874 |
| | | Upstream | -876 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Upstream | -147 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -61 |
| | | Upstream | -63 |
| | | Upstream | -65 |
| | | Upstream | -67 |
| | | Upstream | -69 |
| | | Upstream | -71 |
| | | Upstream | -73 |
| | | Upstream | -218 |
| | | Upstream | -220 |
| | | Upstream | -222 |
| | | Upstream | -224 |
| | | Upstream | -226 |
| | | Upstream | -228 |
| | | Upstream | -230 |
| | | Upstream | -232 |
| | | Upstream | -872 |
| | | Upstream | -874 |
| | | Upstream | -876 |
| | | Upstream | -878 |
| | | Upstream | -880 |
| | | Upstream | -882 |