View conserved binding sites


Gene
EG0002G15940
Description
Probable phenylalanine--tRNA ligase beta subunit
Alias
Eucgr.B02012;Eucgr.B02012.1;PAC:23567113;Eucgr.B02012.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-24
Matrix_146ORA47Not availableUpstream-24
Matrix_147ERF3;AT1G80580Not availableUpstream-22
Matrix_190ATERF1Not availableUpstream-15
Matrix_224ERF1Not availableUpstream-23
Matrix_234RAP2.3Not availableUpstream-15
Matrix_252RAP2.6Not availableUpstream-24
Upstream-15
Matrix_261ATERF-1Not availableUpstream-23
Matrix_287ERF2Not availableUpstream-24
Matrix_295ERF1Not availableUpstream-22
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-23
Matrix_334AT3G23230Not availableUpstream-23
Matrix_343AT2G33710Not availableUpstream-24
Upstream-15
Matrix_355ERF10;ERF11Not availableUpstream-23
Matrix_360ORA59Not availableUpstream-22
Upstream-13
Matrix_363RAP2.3Not availableUpstream-14
Matrix_378ATERF1Not availableUpstream-24
Upstream-15
Matrix_396AP3Not availableUpstream-98
Matrix_406ATERF-7Not availableUpstream-22
Matrix_409DEAR3Not availableUpstream-23
Matrix_426CRF1;CRF2Not availableUpstream-23
Matrix_45DRNNot availableUpstream-22
Matrix_462ATERF-8Not availableUpstream-22
Matrix_484ATERF13Not availableUpstream-22
Matrix_493AT1G22985;AT1G71130Not availableUpstream-23
Matrix_50ATERF14;AT5G43410Not availableUpstream-23
Matrix_506DRNL;ATERF-4Not availableUpstream-23
Matrix_517ERF12Not availableUpstream-22
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-23
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-23
Matrix_91CRF3Not availableUpstream-23
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-21
Upstream-12
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-13
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-96