View conserved binding sites


Gene
EG0002G15840
Description
Putative RING-H2 finger protein ATL36
Alias
Eucgr.B01999;Eucgr.B01999.1;PAC:23567097;Eucgr.B01999.1
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-323
Upstream-324
Matrix_113ABI5Not availableUpstream-323
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-321
Matrix_129ABF1Not availableUpstream-324
Matrix_14ZCW32;AT5G62610Not availableUpstream-324
Upstream-325
Matrix_144AT5G08330;AT5G23280Not availableUpstream-252
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-321
Matrix_156POC1Not availableUpstream-323
Matrix_192FHY3/FAR1Not availableUpstream-321
Matrix_196TCP20;AT5G41030Not availableUpstream-250
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-324
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-321
Matrix_24POC1Not availableUpstream-321
Matrix_247PIF3Not availableUpstream-324
Upstream-325
Matrix_296GBF2Not availableUpstream-324
Upstream-325
Matrix_297TCP15Not availableUpstream-251
Matrix_300bZIP68;bZIP16Not availableUpstream-324
Upstream-325
Matrix_301PIL5Not availableUpstream-319
Matrix_331GBF1Not availableUpstream-323
Upstream-324
Matrix_332SPT;ALCNot availableUpstream-324
Upstream-325
Matrix_345POC1Not availableUpstream-321
Upstream-322
Matrix_348AT5G51910Not availableUpstream-251
Upstream-252
Matrix_42AT2G45680Not availableUpstream-251
Matrix_48PINot availableUpstream-178
Matrix_7PIF4Not availableUpstream-324
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-257
Upstream-258
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-326
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-326
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-949
Upstream-952
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-324
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-325
Upstream-326
Motif_244ABRE-like binding site motifNot availableUpstream-324
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-324
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-326
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1212
Motif_400ABREAZMRAB28ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissuesUpstream-324
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-325
Upstream-326
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-325
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-324
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-324
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-309
Motif_636AMMORESVDCRNIA1Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activationUpstream-255
Motif_638ABRE binding site motifNot availableUpstream-324
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-323
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-169
Upstream-171
Upstream-173
Upstream-175