View conserved binding sites


Gene
CM01596G03660
Description
CUL4-associated factor homolog 1
Alias
MELO3C003650;MELO3C003650T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1061
Matrix_110ATABI4;AT3G57600Not availableUpstream-1065
Matrix_119RRTF1Not availableUpstream-1060
Matrix_146ORA47Not availableUpstream-1064
Matrix_147ERF3;AT1G80580Not availableUpstream-1059
Matrix_151ASIL1Not availableUpstream-1060
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1060
Matrix_178HSFB2ANot availableUpstream-1485
Matrix_190ATERF1Not availableUpstream-1065
Upstream-1064
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream9375
Matrix_224ERF1Not availableUpstream-1063
Matrix_230ARR11Not availableUpstream-1066
Matrix_234RAP2.3Not availableUpstream-1064
Matrix_243RAP2.12;RAP2.2Not availableUpstream-1060
Matrix_252RAP2.6Not availableUpstream-1065
Upstream-1064
Matrix_261ATERF-1Not availableUpstream-1060
Matrix_272DEAR4Not availableUpstream-1064
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1060
Matrix_334AT3G23230Not availableUpstream-1060
Matrix_343AT2G33710Not availableUpstream-1064
Upstream-1061
Matrix_344ATERF15;AT4G18450Not availableUpstream-1059
Matrix_350ARR14Not availableUpstream-1066
Matrix_355ERF10;ERF11Not availableUpstream-1060
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1060
Matrix_378ATERF1Not availableUpstream-1064
Matrix_406ATERF-7Not availableUpstream-1059
Matrix_433ATERF1Not availableUpstream-1060
Matrix_439AP3Not availableUpstream-1014
Matrix_448ATERF6Not availableUpstream-1060
Matrix_45DRNNot availableUpstream-1059
Matrix_462ATERF-8Not availableUpstream-1059
Matrix_466PRR5Not availableUpstream-976
Matrix_473RRTF1Not availableUpstream-1064
Matrix_484ATERF13Not availableUpstream-1059
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1060
Matrix_5AT5G51190;ERF104Not availableUpstream-1059
Matrix_50ATERF14;AT5G43410Not availableUpstream-1060
Matrix_506DRNL;ATERF-4Not availableUpstream-1060
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1060
Matrix_91CRF3Not availableUpstream-1060
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-1001
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-982
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-996
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-972
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-1053
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1053
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-919
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-932
Motif_329AMMORESIIUDCRNIA1Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activationUpstream-921
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-1053
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-986
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-1056
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-1045
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-986
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-984
Motif_686LFYStructural basis for LEAFY floral switch function and similarity with helix-turn-helix proteinsUpstream-199