View conserved binding sites


Gene
CM00089G00600
Description
SNF1-related protein kinase regulatory subunit gamma-1
Alias
MELO3C026210;MELO3C026210T1
Binding siteNameDescriptionLocationPosition
Matrix_147ERF3;AT1G80580Not availableUpstream-517
Matrix_232TCP23Not availableUpstream-420
Upstream-421
Matrix_24POC1Not availableUpstream-412
Upstream-413
Matrix_243RAP2.12;RAP2.2Not availableUpstream-518
Matrix_287ERF2Not availableUpstream-517
Matrix_295ERF1Not availableUpstream-517
Matrix_297TCP15Not availableUpstream-420
Matrix_301PIL5Not availableUpstream-498
Matrix_338AP2Not availableUpstream-395
Upstream-396
Matrix_344ATERF15;AT4G18450Not availableUpstream-517
Matrix_348AT5G51910Not availableUpstream-421
Matrix_360ORA59Not availableUpstream-517
Matrix_374AT5G07580;AT5G61590Not availableUpstream-517
Matrix_405DREB2CNot availableUpstream-518
Matrix_406ATERF-7Not availableUpstream-515
Matrix_42AT2G45680Not availableUpstream-421
Matrix_438AtbZIP63Not availableUpstream-509
Matrix_440LFYNot availableUpstream-398
Matrix_456bZIP60Not availableUpstream-511
Matrix_462ATERF-8Not availableUpstream-515
Matrix_48PINot availableUpstream-12
Matrix_484ATERF13Not availableUpstream-517
Matrix_488ABF1Not availableUpstream-397
Upstream-398
Upstream-510
Matrix_49FHY3/FAR1Not availableUpstream-489
Matrix_50ATERF14;AT5G43410Not availableUpstream-516
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-1648
Matrix_511AT1G05805;AT1G35460;AT1G51140;AT2G42280;AT2G43140;AT4G09180Not availableUpstream-399
Matrix_77PRR5Not availableUpstream-502
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-419
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-324
Upstream-378
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-426
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-325
Upstream-379
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-504
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-377
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-400
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-326
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-418
Upstream-504
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-517
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-504
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-420
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-422
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-418
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-419
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-400