View conserved binding sites


Gene
CM00051G01600
Description
b binding protein of LHCII type I, chloroplastic
Alias
MELO3C022113;MELO3C022113T1
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-206
Upstream-128
Matrix_128TGA2Not availableUpstream-204
Matrix_166TGA4Not availableUpstream-204
Matrix_192FHY3/FAR1Not availableUpstream-208
Upstream-128
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-208
Upstream-128
Matrix_247PIF3Not availableUpstream-129
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-125
Matrix_259AT1G50680;AT1G51120Not availableUpstream-129
Matrix_278AtbZIP44Not availableUpstream-206
Matrix_296GBF2Not availableUpstream-205
Upstream-128
Matrix_300bZIP68;bZIP16Not availableUpstream-205
Upstream-128
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-204
Matrix_311TGA1Not availableUpstream-204
Matrix_331GBF1Not availableUpstream-206
Upstream-128
Matrix_356PRR5Not availableUpstream-136
Matrix_399TGA1Not availableUpstream-204
Matrix_403BZR1Not availableUpstream-207
Matrix_430TOE2Not availableDownstream2649
Matrix_438AtbZIP63Not availableUpstream-205
Upstream-131
Matrix_456bZIP60Not availableUpstream-205
Upstream-129
Matrix_488ABF1Not availableUpstream-213
Upstream-130
Matrix_494OBP4Not availableUpstream-255
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-204
Matrix_6AT1G70000Not availableUpstream-253
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-43
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-256
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-169
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-251
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-186
Upstream-147
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-210
Motif_244ABRE-like binding site motifNot availableUpstream-205
Upstream-127
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-315
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-203
Upstream-127
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-130
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-204
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-204
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-202
Motif_497ARE1ARE (antioxidant response element); antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genesUpstream-205
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-205
Upstream-126
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-255
Motif_573HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-205
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-202
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-205
Upstream-126
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-250
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-206
Upstream-126
Motif_648ARE2ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1Upstream-205
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-205