View conserved binding sites


Gene
CM00047G01410
Description
ATP-citrate synthase beta chain protein 1
Alias
MELO3C021268;MELO3C021268T1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1068
Matrix_153AP2Not availableUpstream-1068
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-1179
Upstream-1180
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-1069
Matrix_211MYB3Not availableUpstream-1397
Matrix_24POC1Not availableUpstream-1065
Matrix_25AP3Not availableUpstream-851
Upstream-910
Matrix_264ATAREB1Not availableUpstream-1066
Matrix_283GATA15;GATA17;AT4G16141;GATA22;GATA23;GATA16;GNCNot availableUpstream-1059
Matrix_301PIL5Not availableUpstream-1064
Matrix_332SPT;ALCNot availableUpstream-1069
Matrix_369AT2G18300Not availableUpstream-1067
Upstream-1069
Matrix_401MYB55Not availableUpstream-956
Matrix_403BZR1Not availableUpstream-1067
Matrix_434ARR11Not availableUpstream-57
Matrix_449BIM2Not availableUpstream-1069
Matrix_452MYB46Not availableUpstream-956
Matrix_48PINot availableUpstream-775
Matrix_488ABF1Not availableUpstream-1061
Matrix_53MYC3Not availableUpstream-1067
Upstream-1071
Matrix_64PIF5Not availableUpstream-1114
Matrix_7PIF4Not availableUpstream-1069
Matrix_80BIM1Not availableUpstream-1068
Upstream-1070
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-1069
Upstream-1101
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1070
Upstream-1114
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1070
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1089
Motif_323MYB1LEPRTomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))Upstream-1091
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-1070
Motif_351GARE1OSREP1Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-1088
Motif_419MYB4 binding site motifNot availableUpstream-1091
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-640
Upstream-1887
Motif_520AMYBOX1amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-1088
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-1067
Motif_590MYB3 binding site motifExpression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stressesUpstream-1091
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-1398