View conserved binding sites


Gene
CM00031G05290
Description
Transcription factor GTE7
Alias
MELO3C018043;MELO3C018043T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-137
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-435
Upstream-429
Matrix_110ATABI4;AT3G57600Not availableUpstream-139
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-432
Matrix_120BEE2Not availableUpstream-428
Matrix_122ABF1;AREB2Not availableUpstream-429
Matrix_130TCP16Not availableUpstream-569
Matrix_138RRTF1Not availableUpstream-138
Matrix_14ZCW32;AT5G62610Not availableUpstream-434
Upstream-427
Matrix_144AT5G08330;AT5G23280Not availableUpstream-569
Upstream-568
Matrix_146ORA47Not availableUpstream-137
Matrix_147ERF3;AT1G80580Not availableUpstream-137
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-641
Matrix_150UNE10;PIF7Not availableUpstream-433
Upstream-427
Matrix_153AP2Not availableUpstream-435
Upstream-429
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-136
Matrix_156POC1Not availableUpstream-427
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-434
Upstream-428
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-134
Matrix_186FHY3Not availableUpstream-135
Upstream-115
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-428
Matrix_190ATERF1Not availableUpstream-137
Upstream-136
Matrix_196TCP20;AT5G41030Not availableUpstream-571
Upstream-567
Upstream-566
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-428
Matrix_214AP1Not availableUpstream-436
Matrix_216TCP16Not availableUpstream-569
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-437
Matrix_232TCP23Not availableUpstream-570
Upstream-568
Upstream-567
Matrix_233MYC3Not availableUpstream-433
Upstream-427
Matrix_234RAP2.3Not availableUpstream-137
Matrix_243RAP2.12;RAP2.2Not availableUpstream-136
Matrix_246ARR10Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulatorsUpstream-292
Matrix_252RAP2.6Not availableUpstream-137
Matrix_253ETTNot availableUpstream-588
Matrix_261ATERF-1Not availableUpstream-137
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-569
Matrix_269FHY3/FAR1Not availableUpstream-256
Matrix_272DEAR4Not availableUpstream-137
Matrix_278AtbZIP44Not availableUpstream-832
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-569
Upstream-568
Matrix_281TCP13Not availableUpstream-569
Matrix_285DDF1Not availableUpstream-587
Matrix_287ERF2Not availableUpstream-137
Matrix_288RAP2.3Not availableUpstream-138
Matrix_294MEE35Not availableUpstream-569
Matrix_295ERF1Not availableUpstream-137
Matrix_297TCP15Not availableUpstream-570
Upstream-568
Upstream-567
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-436
Matrix_320MYC4Not availableUpstream-433
Upstream-427
Matrix_321HRDNot availableUpstream-137
Matrix_323BIM3Not availableUpstream-428
Matrix_330MYC2;TT8Not availableUpstream-428
Matrix_332SPT;ALCNot availableUpstream-434
Upstream-427
Matrix_334AT3G23230Not availableUpstream-136
Matrix_343AT2G33710Not availableUpstream-137
Matrix_344ATERF15;AT4G18450Not availableUpstream-137
Matrix_345POC1Not availableUpstream-432
Matrix_348AT5G51910Not availableUpstream-569
Upstream-568
Matrix_355ERF10;ERF11Not availableUpstream-138
Matrix_360ORA59Not availableUpstream-137
Matrix_363RAP2.3Not availableUpstream-138
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-433
Upstream-427
Matrix_369AT2G18300Not availableUpstream-436
Upstream-434
Upstream-430
Matrix_374AT5G07580;AT5G61590Not availableUpstream-137
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-137
Matrix_378ATERF1Not availableUpstream-137
Matrix_389ILR3Not availableUpstream-428
Matrix_40TCP2Not availableUpstream-569
Matrix_403BZR1Not availableUpstream-430
Matrix_406ATERF-7Not availableUpstream-139
Matrix_408GATA12Not availableUpstream-292
Matrix_42AT2G45680Not availableUpstream-569
Upstream-568
Matrix_426CRF1;CRF2Not availableUpstream-136
Matrix_448ATERF6Not availableUpstream-138
Matrix_449BIM2Not availableUpstream-428
Matrix_45DRNNot availableUpstream-137
Matrix_462ATERF-8Not availableUpstream-139
Matrix_465MYC4Not availableUpstream-428
Matrix_473RRTF1Not availableUpstream-137
Matrix_475AT5G64220Not availableUpstream-135
Upstream-115
Matrix_476bHLH115;bHLH34Not availableUpstream-433
Upstream-427
Matrix_480BES1Not availableUpstream-435
Upstream-428
Matrix_484ATERF13Not availableUpstream-137
Matrix_493AT1G22985;AT1G71130Not availableUpstream-137
Matrix_506DRNL;ATERF-4Not availableUpstream-136
Matrix_507TCP3Not availableUpstream-570
Upstream-568
Matrix_517ERF12Not availableUpstream-137
Matrix_53MYC3Not availableUpstream-436
Upstream-432
Upstream-430
Matrix_55PIF3Not availableUpstream-435
Upstream-429
Matrix_60AT1G01260;AT5G57150Not availableUpstream-433
Upstream-427
Matrix_7PIF4Not availableUpstream-426
Matrix_77PRR5Not availableUpstream-435
Upstream-430
Upstream-135
Matrix_80BIM1Not availableUpstream-433
Upstream-429
Upstream-132
Matrix_82TCP17Not availableUpstream-569
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-136
Matrix_91CRF3Not availableUpstream-137
Matrix_94TCP5Not availableUpstream-569
Motif_121WRKY43;WRKY38;WRKY26Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain functionUpstream-388
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-509
Upstream-431
Upstream-427
Motif_140DREB2A;DREB1AIdentification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stressesUpstream-41
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-84
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-413
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-432
Upstream-426
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneUpstream-406
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-432
Upstream-426
Upstream-391
Upstream-84
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionUpstream-177
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-433
Upstream-432
Upstream-427
Upstream-426
Upstream-132
Upstream-112
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-591
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-520
Motif_244ABRE-like binding site motifNot availableUpstream-434
Motif_248L1-boxArabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-elementUpstream-514
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-84
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-390
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-386
Motif_297Bellringer/replumless/pennywise BS1 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-1691
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-136
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-132
Upstream-112
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-432
Upstream-426
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-408
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-325
Upstream-50
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-520
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-39
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-444
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-406
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-57
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-84
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-433
Upstream-426
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-38
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneUpstream-395
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-667
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-104
Motif_517LEAFYATAGTarget sequence of LEAFY in the intron of AGAMOUS gene in ArabidopsisUpstream-65
Motif_525CRTDREHVCBF2Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperatureUpstream-586
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-39
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-253
Motif_580L1BOXATPDF1L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain proteinUpstream-514
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-444
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-586
Upstream-327
Upstream-38
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-568
Upstream-496
Motif_606NAPINMOTIFBNSequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seedsUpstream-83
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-237
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-38
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-301
Upstream-176
Upstream-175
Upstream-59
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-301
Upstream-176
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-492
Motif_94UP1ATMSDUp1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-496
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-422