View conserved binding sites


Gene
CM00031G00370
Description
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Alias
MELO3C017569;MELO3C017569T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-58
Matrix_119RRTF1Not availableUpstream-59
Matrix_138RRTF1Not availableUpstream-59
Matrix_187CDC5Not availableUpstream-54
Matrix_224ERF1Not availableUpstream-59
Matrix_234RAP2.3Not availableUpstream-58
Matrix_25AP3Not availableUpstream-141
Matrix_252RAP2.6Not availableUpstream-58
Matrix_277RAP2.6Not availableUpstream-59
Matrix_287ERF2Not availableUpstream-58
Matrix_288RAP2.3Not availableUpstream-59
Matrix_295ERF1Not availableUpstream-58
Matrix_314WRKY65;WRKY14;WRKY35;WRKY69;WRKY16;ATWRKY52Not availableUpstream-471
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-59
Matrix_334AT3G23230Not availableUpstream-57
Matrix_343AT2G33710Not availableUpstream-58
Matrix_349CDC5Not availableUpstream-54
Matrix_35YAB5;YAB3Not availableUpstream-54
Matrix_355ERF10;ERF11Not availableUpstream-59
Matrix_360ORA59Not availableUpstream-58
Matrix_363RAP2.3Not availableUpstream-59
Matrix_374AT5G07580;AT5G61590Not availableUpstream-58
Matrix_378ATERF1Not availableUpstream-58
Matrix_406ATERF-7Not availableUpstream-60
Matrix_426CRF1;CRF2Not availableUpstream-57
Matrix_449BIM2Not availableUpstream-413
Matrix_473RRTF1Not availableUpstream-58
Matrix_48PINot availableUpstream-14
Matrix_484ATERF13Not availableUpstream-58
Matrix_50ATERF14;AT5G43410Not availableUpstream-59
Matrix_517ERF12Not availableUpstream-50
Matrix_80BIM1Not availableUpstream-414
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-57
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-347
Upstream-337
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-528
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-45
Upstream-35
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-518
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-518
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-57
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-57
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-518
Motif_402AtTINY2Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thalianaUpstream-59
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-58
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-500
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-347
Upstream-341
Upstream-337