Matrix_438 | AtbZIP63 | Not available | Upstream | -736 |
Matrix_48 | PI | Not available | Upstream | -634 |
Matrix_507 | TCP3 | Not available | Intron | 8553 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -596 |
| | | Upstream | -592 |
| | | Upstream | -590 |
| | | Upstream | -588 |
| | | Upstream | -586 |
| | | Upstream | -584 |
| | | Upstream | -582 |
| | | Intron | 13413 |
Motif_150 | RBCSCONSENSUS | rbcS general consensus sequence; AATCCAA or AATCCAAC | Upstream | -443 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -552 |
| | | Upstream | -447 |
Motif_261 | S1FBOXSORPS1L21 | S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity | Upstream | -483 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -211 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -209 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -178 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -596 |
| | | Upstream | -594 |
| | | Upstream | -592 |
| | | Upstream | -590 |
| | | Upstream | -588 |
| | | Upstream | -586 |
| | | Upstream | -584 |
| | | Upstream | -582 |
| | | Upstream | -580 |
| | | Upstream | -510 |
| | | Intron | 13413 |
| | | Intron | 13415 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -560 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -535 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -552 |
| | | Upstream | -448 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -539 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -630 |
| | | Upstream | -628 |
| | | Upstream | -596 |
| | | Upstream | -594 |
| | | Upstream | -592 |
| | | Upstream | -590 |
| | | Upstream | -588 |
| | | Upstream | -586 |
| | | Upstream | -584 |
| | | Upstream | -582 |
| | | Upstream | -580 |
| | | Upstream | -578 |
| | | Upstream | -576 |
| | | Upstream | -574 |
| | | Upstream | -524 |
| | | Upstream | -510 |
| | | Upstream | -508 |
| | | Upstream | -506 |
| | | Upstream | -504 |
| | | Intron | 13413 |
| | | Intron | 13415 |
| | | Intron | 13417 |
| | | Intron | 13419 |
| | | Intron | 13421 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -730 |