Matrix_101 | ERF5 | Not available | Upstream | -81 |
| | | Upstream | -82 |
| | | Upstream | -98 |
| | | Upstream | -99 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -22 |
| | | Upstream | -23 |
Matrix_119 | RRTF1 | Not available | Upstream | -23 |
| | | Upstream | -24 |
Matrix_146 | ORA47 | Not available | Upstream | -98 |
| | | Upstream | -99 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -23 |
| | | Upstream | -24 |
Matrix_190 | ATERF1 | Not available | Upstream | -97 |
| | | Upstream | -98 |
| | | Upstream | -99 |
Matrix_224 | ERF1 | Not available | Upstream | -26 |
| | | Upstream | -27 |
| | | Upstream | -80 |
| | | Upstream | -81 |
Matrix_234 | RAP2.3 | Not available | Upstream | -98 |
| | | Upstream | -99 |
Matrix_252 | RAP2.6 | Not available | Upstream | -27 |
| | | Upstream | -28 |
| | | Upstream | -98 |
| | | Upstream | -99 |
Matrix_261 | ATERF-1 | Not available | Upstream | -81 |
| | | Upstream | -82 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_272 | DEAR4 | Not available | Upstream | -98 |
| | | Upstream | -99 |
Matrix_277 | RAP2.6 | Not available | Upstream | -80 |
| | | Upstream | -81 |
Matrix_287 | ERF2 | Not available | Upstream | -81 |
| | | Upstream | -82 |
| | | Upstream | -98 |
| | | Upstream | -99 |
Matrix_288 | RAP2.3 | Not available | Upstream | -99 |
| | | Upstream | -100 |
Matrix_295 | ERF1 | Not available | Upstream | -81 |
| | | Upstream | -82 |
| | | Upstream | -100 |
| | | Upstream | -101 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -23 |
| | | Upstream | -24 |
| | | Upstream | -80 |
| | | Upstream | -81 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_334 | AT3G23230 | Not available | Upstream | -82 |
| | | Upstream | -83 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_343 | AT2G33710 | Not available | Upstream | -98 |
| | | Upstream | -99 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -23 |
| | | Upstream | -24 |
| | | Upstream | -80 |
| | | Upstream | -81 |
Matrix_363 | RAP2.3 | Not available | Upstream | -99 |
| | | Upstream | -100 |
Matrix_369 | AT2G18300 | Not available | Upstream | -74 |
| | | Upstream | -76 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -81 |
| | | Upstream | -82 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_378 | ATERF1 | Not available | Upstream | -98 |
| | | Upstream | -99 |
Matrix_396 | AP3 | Not available | Intron | 766 |
Matrix_406 | ATERF-7 | Not available | Upstream | -79 |
| | | Upstream | -80 |
Matrix_409 | DEAR3 | Not available | Upstream | -23 |
| | | Upstream | -24 |
| | | Upstream | -80 |
| | | Upstream | -81 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -25 |
| | | Upstream | -26 |
| | | Upstream | -82 |
| | | Upstream | -83 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_473 | RRTF1 | Not available | Upstream | -98 |
| | | Upstream | -99 |
Matrix_490 | AtMYB77;ATMYB44 | Not available | Upstream | -136 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -24 |
| | | Upstream | -25 |
| | | Upstream | -81 |
| | | Upstream | -82 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -80 |
| | | Upstream | -81 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -25 |
| | | Upstream | -26 |
| | | Upstream | -82 |
| | | Upstream | -83 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -23 |
| | | Upstream | -24 |
| | | Upstream | -26 |
| | | Upstream | -27 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -99 |
| | | Upstream | -100 |
Matrix_90 | BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915 | Not available | Upstream | -77 |
| | | Upstream | -78 |
Matrix_91 | CRF3 | Not available | Upstream | -24 |
| | | Upstream | -25 |
| | | Upstream | -81 |
| | | Upstream | -82 |
| | | Upstream | -99 |
| | | Upstream | -100 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -112 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -95 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -106 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -136 |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -81 |
| | | Upstream | -102 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -82 |
| | | Upstream | -101 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -82 |
| | | Upstream | -100 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -73 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -151 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -53 |