View conserved binding sites


Gene
CM00022G03920
Description
Protein LATERAL ROOT PRIMORDIUM 1
Alias
MELO3C014564;MELO3C014564T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-81
Upstream-82
Upstream-98
Upstream-99
Matrix_110ATABI4;AT3G57600Not availableUpstream-22
Upstream-23
Matrix_119RRTF1Not availableUpstream-23
Upstream-24
Matrix_146ORA47Not availableUpstream-98
Upstream-99
Matrix_171LBD3;LBD4Not availableUpstream-23
Upstream-24
Matrix_190ATERF1Not availableUpstream-97
Upstream-98
Upstream-99
Matrix_224ERF1Not availableUpstream-26
Upstream-27
Upstream-80
Upstream-81
Matrix_234RAP2.3Not availableUpstream-98
Upstream-99
Matrix_252RAP2.6Not availableUpstream-27
Upstream-28
Upstream-98
Upstream-99
Matrix_261ATERF-1Not availableUpstream-81
Upstream-82
Upstream-99
Upstream-100
Matrix_272DEAR4Not availableUpstream-98
Upstream-99
Matrix_277RAP2.6Not availableUpstream-80
Upstream-81
Matrix_287ERF2Not availableUpstream-81
Upstream-82
Upstream-98
Upstream-99
Matrix_288RAP2.3Not availableUpstream-99
Upstream-100
Matrix_295ERF1Not availableUpstream-81
Upstream-82
Upstream-100
Upstream-101
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-23
Upstream-24
Upstream-80
Upstream-81
Upstream-99
Upstream-100
Matrix_334AT3G23230Not availableUpstream-82
Upstream-83
Upstream-99
Upstream-100
Matrix_343AT2G33710Not availableUpstream-98
Upstream-99
Matrix_355ERF10;ERF11Not availableUpstream-23
Upstream-24
Upstream-80
Upstream-81
Matrix_363RAP2.3Not availableUpstream-99
Upstream-100
Matrix_369AT2G18300Not availableUpstream-74
Upstream-76
Matrix_374AT5G07580;AT5G61590Not availableUpstream-81
Upstream-82
Upstream-99
Upstream-100
Matrix_378ATERF1Not availableUpstream-98
Upstream-99
Matrix_396AP3Not availableIntron766
Matrix_406ATERF-7Not availableUpstream-79
Upstream-80
Matrix_409DEAR3Not availableUpstream-23
Upstream-24
Upstream-80
Upstream-81
Upstream-99
Upstream-100
Matrix_426CRF1;CRF2Not availableUpstream-25
Upstream-26
Upstream-82
Upstream-83
Upstream-99
Upstream-100
Matrix_473RRTF1Not availableUpstream-98
Upstream-99
Matrix_490AtMYB77;ATMYB44Not availableUpstream-136
Matrix_493AT1G22985;AT1G71130Not availableUpstream-24
Upstream-25
Upstream-81
Upstream-82
Upstream-99
Upstream-100
Matrix_50ATERF14;AT5G43410Not availableUpstream-80
Upstream-81
Upstream-99
Upstream-100
Matrix_506DRNL;ATERF-4Not availableUpstream-25
Upstream-26
Upstream-82
Upstream-83
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-23
Upstream-24
Upstream-26
Upstream-27
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-99
Upstream-100
Matrix_90BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915Not availableUpstream-77
Upstream-78
Matrix_91CRF3Not availableUpstream-24
Upstream-25
Upstream-81
Upstream-82
Upstream-99
Upstream-100
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-112
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-95
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-106
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-136
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-81
Upstream-102
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-82
Upstream-101
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-82
Upstream-100
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-73
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-151
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-53