Matrix_104 | PI | Not available | Upstream | -600 |
| | | Upstream | -601 |
Matrix_113 | ABI5 | Not available | Upstream | -600 |
| | | Upstream | -601 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -597 |
Matrix_120 | BEE2 | Not available | Upstream | -601 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -600 |
| | | Upstream | -601 |
Matrix_129 | ABF1 | Not available | Upstream | -601 |
| | | Upstream | -602 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -602 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -597 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -601 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -598 |
| | | Upstream | -599 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -598 |
| | | Upstream | -599 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -601 |
Matrix_214 | AP1 | Not available | Upstream | -599 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -602 |
| | | Upstream | -603 |
Matrix_24 | POC1 | Not available | Upstream | -597 |
Matrix_247 | PIF3 | Not available | Upstream | -601 |
Matrix_264 | ATAREB1 | Not available | Upstream | -598 |
| | | Upstream | -601 |
Matrix_296 | GBF2 | Not available | Upstream | -601 |
| | | Upstream | -602 |
Matrix_297 | TCP15 | Not available | Upstream | -647 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -601 |
| | | Upstream | -602 |
Matrix_301 | PIL5 | Not available | Upstream | -596 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -601 |
Matrix_331 | GBF1 | Not available | Upstream | -600 |
| | | Upstream | -601 |
Matrix_332 | SPT;ALC | Not available | Upstream | -602 |
Matrix_338 | AP2 | Not available | Upstream | -598 |
| | | Upstream | -599 |
Matrix_356 | PRR5 | Not available | Upstream | -598 |
| | | Upstream | -599 |
Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Upstream | -1653 |
Matrix_389 | ILR3 | Not available | Upstream | -601 |
Matrix_403 | BZR1 | Not available | Upstream | -599 |
Matrix_42 | AT2G45680 | Not available | Upstream | -648 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -377 |
| | | Upstream | -424 |
| | | Upstream | -485 |
Matrix_443 | AGL15 | Not available | Upstream | -599 |
| | | Upstream | -600 |
Matrix_456 | bZIP60 | Not available | Upstream | -379 |
| | | Upstream | -424 |
| | | Upstream | -487 |
Matrix_465 | MYC4 | Not available | Upstream | -601 |
Matrix_480 | BES1 | Not available | Upstream | -600 |
| | | Upstream | -601 |
Matrix_488 | ABF1 | Not available | Upstream | -593 |
Matrix_53 | MYC3 | Not available | Upstream | -603 |
Matrix_55 | PIF3 | Not available | Upstream | -600 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -378 |
| | | Upstream | -486 |
Matrix_7 | PIF4 | Not available | Upstream | -603 |
Matrix_77 | PRR5 | Not available | Upstream | -599 |
Motif_122 | TGTCACACMCUCUMISIN | TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene | Upstream | -598 |
Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | Upstream | -563 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -603 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -603 |
Motif_197 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | Upstream | -601 |
Motif_207 | MAMMALENHAN | Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene | Upstream | -564 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -602 |
| | | Upstream | -603 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -380 |
| | | Upstream | -423 |
| | | Upstream | -488 |
| | | Upstream | -601 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -602 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -558 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -380 |
| | | Upstream | -425 |
| | | Upstream | -488 |
| | | Upstream | -603 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -379 |
| | | Upstream | -424 |
| | | Upstream | -487 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -379 |
| | | Upstream | -424 |
| | | Upstream | -487 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -603 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -379 |
| | | Upstream | -426 |
| | | Upstream | -487 |
| | | Upstream | -1612 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -379 |
| | | Upstream | -426 |
| | | Upstream | -487 |
| | | Upstream | -1612 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -565 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -601 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -432 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -432 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -234 |
| | | Upstream | -236 |
| | | Upstream | -238 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -601 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -382 |