View conserved binding sites


Gene
CM00016G05920
Description
No description available
Alias
MELO3C012256;MELO3C012256T1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-600
Upstream-601
Matrix_113ABI5Not availableUpstream-600
Upstream-601
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-597
Matrix_120BEE2Not availableUpstream-601
Matrix_122ABF1;AREB2Not availableUpstream-600
Upstream-601
Matrix_129ABF1Not availableUpstream-601
Upstream-602
Matrix_145GBF4;AT5G44080Not availableUpstream-602
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-597
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-601
Matrix_192FHY3/FAR1Not availableUpstream-598
Upstream-599
Matrix_194HYH;HY5Not availableUpstream-598
Upstream-599
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-601
Matrix_214AP1Not availableUpstream-599
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-602
Upstream-603
Matrix_24POC1Not availableUpstream-597
Matrix_247PIF3Not availableUpstream-601
Matrix_264ATAREB1Not availableUpstream-598
Upstream-601
Matrix_296GBF2Not availableUpstream-601
Upstream-602
Matrix_297TCP15Not availableUpstream-647
Matrix_300bZIP68;bZIP16Not availableUpstream-601
Upstream-602
Matrix_301PIL5Not availableUpstream-596
Matrix_330MYC2;TT8Not availableUpstream-601
Matrix_331GBF1Not availableUpstream-600
Upstream-601
Matrix_332SPT;ALCNot availableUpstream-602
Matrix_338AP2Not availableUpstream-598
Upstream-599
Matrix_356PRR5Not availableUpstream-598
Upstream-599
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-1653
Matrix_389ILR3Not availableUpstream-601
Matrix_403BZR1Not availableUpstream-599
Matrix_42AT2G45680Not availableUpstream-648
Matrix_438AtbZIP63Not availableUpstream-377
Upstream-424
Upstream-485
Matrix_443AGL15Not availableUpstream-599
Upstream-600
Matrix_456bZIP60Not availableUpstream-379
Upstream-424
Upstream-487
Matrix_465MYC4Not availableUpstream-601
Matrix_480BES1Not availableUpstream-600
Upstream-601
Matrix_488ABF1Not availableUpstream-593
Matrix_53MYC3Not availableUpstream-603
Matrix_55PIF3Not availableUpstream-600
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-378
Upstream-486
Matrix_7PIF4Not availableUpstream-603
Matrix_77PRR5Not availableUpstream-599
Motif_122TGTCACACMCUCUMISINTGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin geneUpstream-598
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Upstream-563
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-603
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-603
Motif_197HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-601
Motif_207MAMMALENHANCore sequence in enhancers from polyoma virus and from the IgM heavy chain geneUpstream-564
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-602
Upstream-603
Motif_244ABRE-like binding site motifNot availableUpstream-380
Upstream-423
Upstream-488
Upstream-601
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-602
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-558
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-380
Upstream-425
Upstream-488
Upstream-603
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-379
Upstream-424
Upstream-487
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-379
Upstream-424
Upstream-487
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-603
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-379
Upstream-426
Upstream-487
Upstream-1612
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-379
Upstream-426
Upstream-487
Upstream-1612
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-565
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-601
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-432
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-432
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-234
Upstream-236
Upstream-238
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-601
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-382