Matrix_104 | PI | Not available | Upstream | -158 |
Matrix_106 | AT5G47390 | Not available | Upstream | -8 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -158 |
Matrix_109 | GBF3 | Not available | Upstream | -158 |
| | | Upstream | -159 |
| | | Upstream | -160 |
Matrix_113 | ABI5 | Not available | Upstream | -158 |
| | | Upstream | -159 |
| | | Upstream | -160 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -155 |
| | | Upstream | -156 |
Matrix_120 | BEE2 | Not available | Upstream | -159 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -158 |
| | | Upstream | -159 |
Matrix_129 | ABF1 | Not available | Upstream | -159 |
Matrix_134 | ABF1 | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -155 |
Matrix_156 | POC1 | Not available | Upstream | -158 |
| | | Upstream | -159 |
| | | Upstream | -160 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -159 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -156 |
| | | Upstream | -159 |
| | | Upstream | -160 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -156 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -99 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -159 |
Matrix_201 | AT1G74840 | Not available | Upstream | -8 |
Matrix_214 | AP1 | Not available | Upstream | -157 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -156 |
| | | Upstream | -159 |
| | | Upstream | -160 |
Matrix_232 | TCP23 | Not available | Upstream | -100 |
| | | Upstream | -101 |
Matrix_233 | MYC3 | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_24 | POC1 | Not available | Upstream | -155 |
Matrix_247 | PIF3 | Not available | Upstream | -159 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -159 |
Matrix_264 | ATAREB1 | Not available | Upstream | -156 |
| | | Upstream | -159 |
Matrix_271 | AT3G16350 | Not available | Upstream | -8 |
Matrix_296 | GBF2 | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_301 | PIL5 | Not available | Upstream | -154 |
| | | Upstream | -159 |
| | | Upstream | -160 |
Matrix_323 | BIM3 | Not available | Upstream | -159 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -159 |
Matrix_331 | GBF1 | Not available | Upstream | -158 |
| | | Upstream | -159 |
| | | Upstream | -160 |
Matrix_332 | SPT;ALC | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_336 | AT5G08520 | Not available | Upstream | -8 |
Matrix_338 | AP2 | Not available | Upstream | -156 |
Matrix_339 | bHLH104 | Not available | Upstream | -159 |
Matrix_345 | POC1 | Not available | Upstream | -155 |
| | | Upstream | -156 |
Matrix_348 | AT5G51910 | Not available | Upstream | -101 |
| | | Upstream | -102 |
Matrix_356 | PRR5 | Not available | Upstream | -152 |
| | | Upstream | -156 |
Matrix_369 | AT2G18300 | Not available | Upstream | -157 |
Matrix_389 | ILR3 | Not available | Upstream | -159 |
Matrix_403 | BZR1 | Not available | Upstream | -157 |
Matrix_42 | AT2G45680 | Not available | Upstream | -101 |
| | | Upstream | -102 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -157 |
| | | Upstream | -159 |
Matrix_443 | AGL15 | Not available | Upstream | -157 |
Matrix_449 | BIM2 | Not available | Upstream | -159 |
Matrix_480 | BES1 | Not available | Upstream | -158 |
| | | Upstream | -159 |
Matrix_488 | ABF1 | Not available | Upstream | -151 |
| | | Upstream | -158 |
Matrix_53 | MYC3 | Not available | Upstream | -157 |
| | | Upstream | -160 |
| | | Upstream | -161 |
Matrix_55 | PIF3 | Not available | Upstream | -158 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -159 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_64 | PIF5 | Not available | Upstream | -159 |
| | | Upstream | -160 |
Matrix_7 | PIF4 | Not available | Upstream | -159 |
| | | Upstream | -160 |
| | | Upstream | -161 |
Matrix_77 | PRR5 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_80 | BIM1 | Not available | Upstream | -158 |
| | | Upstream | -159 |
| | | Upstream | -160 |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Upstream | -49 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -78 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -1967 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -10 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -160 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -160 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -158 |
| | | Upstream | -159 |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | Upstream | -11 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -159 |
| | | Upstream | -160 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -158 |
| | | Upstream | -160 |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | Upstream | -85 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -158 |
| | | Upstream | -160 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -85 |
Motif_300 | ACGTROOT1;HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA | Upstream | -158 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -160 |
| | | Upstream | -489 |
Motif_388 | CPRFPCCHS;AtbZIP1 | BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | Upstream | -159 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -83 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1967 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -159 |
| | | Upstream | -160 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -159 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -158 |
| | | Upstream | -161 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -161 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -48 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -158 |
| | | Upstream | -161 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -158 |
| | | Upstream | -160 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -56 |
Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -254 |
| | | Upstream | -271 |