Matrix_101 | ERF5 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -830 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -186 |
| | | Upstream | -189 |
Matrix_119 | RRTF1 | Not available | Upstream | -187 |
Matrix_138 | RRTF1 | Not available | Upstream | -187 |
Matrix_146 | ORA47 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -827 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -186 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -187 |
Matrix_190 | ATERF1 | Not available | Upstream | -186 |
| | | Upstream | -187 |
| | | Upstream | -189 |
| | | Upstream | -190 |
| | | Upstream | -829 |
Matrix_224 | ERF1 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -828 |
| | | Upstream | -831 |
Matrix_234 | RAP2.3 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -830 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -207 |
Matrix_252 | RAP2.6 | Not available | Upstream | -188 |
Matrix_261 | ATERF-1 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -831 |
Matrix_272 | DEAR4 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_287 | ERF2 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -830 |
Matrix_288 | RAP2.3 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -831 |
Matrix_295 | ERF1 | Not available | Upstream | -188 |
Matrix_321 | HRD | Not available | Upstream | -188 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -831 |
Matrix_334 | AT3G23230 | Not available | Upstream | -189 |
| | | Upstream | -190 |
| | | Upstream | -831 |
Matrix_343 | AT2G33710 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -830 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -831 |
Matrix_360 | ORA59 | Not available | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -829 |
| | | Upstream | -832 |
Matrix_363 | RAP2.3 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -831 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -189 |
| | | Upstream | -831 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -188 |
Matrix_378 | ATERF1 | Not available | Upstream | -188 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -187 |
Matrix_405 | DREB2C | Not available | Upstream | -829 |
Matrix_406 | ATERF-7 | Not available | Upstream | -186 |
| | | Upstream | -187 |
Matrix_409 | DEAR3 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -190 |
| | | Upstream | -191 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -189 |
| | | Upstream | -190 |
| | | Upstream | -831 |
Matrix_45 | DRN | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -187 |
Matrix_462 | ATERF-8 | Not available | Upstream | -186 |
| | | Upstream | -187 |
Matrix_473 | RRTF1 | Not available | Upstream | -188 |
Matrix_484 | ATERF13 | Not available | Upstream | -188 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -187 |
| | | Upstream | -188 |
| | | Upstream | -828 |
| | | Upstream | -831 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -189 |
| | | Upstream | -190 |
| | | Upstream | -831 |
Matrix_517 | ERF12 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -187 |
| | | Upstream | -190 |
Matrix_59 | AT4G00238;AT4G00250 | Not available | Upstream | -187 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -189 |
| | | Upstream | -190 |
Matrix_91 | CRF3 | Not available | Upstream | -188 |
| | | Upstream | -189 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -197 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -1123 |
| | | Upstream | -1876 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -209 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -161 |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -188 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -189 |
Motif_349 | QARBNEXTA | QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene | Upstream | -209 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -208 |
| | | Upstream | -328 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -210 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Intron | 2956 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Intron | 2956 |