| Matrix_2 | SEP4 | Not available | Upstream | -334 |
| Matrix_269 | FHY3/FAR1 | Not available | Upstream | -24 |
| | | Upstream | -27 |
| | | Upstream | -30 |
| | | Upstream | -33 |
| | | Upstream | -36 |
| Matrix_310 | AGL3 | The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein | Upstream | -334 |
| Matrix_417 | SEP4 | Not available | Upstream | -334 |
| Matrix_48 | PI | Not available | Upstream | -201 |
| Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Downstream | 1733 |
| Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -750 |
| Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -26 |
| | | Upstream | -29 |
| | | Upstream | -32 |
| | | Upstream | -35 |
| | | Upstream | -38 |
Expansion plot
Gene family finder
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Synteny plot
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Functional clusters
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