Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -712 |
| | | Upstream | -713 |
Matrix_109 | GBF3 | Not available | Upstream | -67 |
| | | Upstream | -712 |
| | | Upstream | -713 |
Matrix_127 | AtMYB15 | More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -1806 |
Matrix_129 | ABF1 | Not available | Upstream | -713 |
| | | Upstream | -714 |
Matrix_130 | TCP16 | Not available | Upstream | -758 |
| | | Upstream | -759 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -714 |
| | | Upstream | -715 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -1906 |
| | | Upstream | -1907 |
Matrix_156 | POC1 | Not available | Upstream | -712 |
| | | Upstream | -713 |
| | | Upstream | -714 |
| | | Upstream | -715 |
Matrix_173 | ZAP1 | Not available | Upstream | -1878 |
| | | Upstream | -1879 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -1771 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -713 |
Matrix_190 | ATERF1 | Not available | Upstream | -378 |
| | | Upstream | -1906 |
| | | Upstream | -1907 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -756 |
| | | Upstream | -757 |
Matrix_211 | MYB3 | Not available | Upstream | -1774 |
Matrix_214 | AP1 | Not available | Upstream | -711 |
| | | Upstream | -712 |
Matrix_216 | TCP16 | Not available | Upstream | -758 |
| | | Upstream | -759 |
Matrix_224 | ERF1 | Not available | Upstream | -1905 |
| | | Upstream | -1906 |
| | | Upstream | -1908 |
| | | Upstream | -1909 |
Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | Upstream | -87 |
Matrix_232 | TCP23 | Not available | Upstream | -597 |
| | | Upstream | -598 |
| | | Upstream | -757 |
| | | Upstream | -758 |
Matrix_233 | MYC3 | Not available | Upstream | -714 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -1905 |
| | | Upstream | -1906 |
Matrix_247 | PIF3 | Not available | Upstream | -713 |
| | | Upstream | -714 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1907 |
| | | Upstream | -1908 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -758 |
| | | Upstream | -759 |
Matrix_268 | EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105 | Not available | Upstream | -736 |
| | | Upstream | -737 |
Matrix_277 | RAP2.6 | Not available | Upstream | -1905 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -598 |
| | | Upstream | -599 |
Matrix_294 | MEE35 | Not available | Upstream | -758 |
| | | Upstream | -759 |
Matrix_295 | ERF1 | Not available | Upstream | -1906 |
| | | Upstream | -1907 |
Matrix_296 | GBF2 | Not available | Upstream | -713 |
| | | Upstream | -714 |
Matrix_297 | TCP15 | Not available | Upstream | -597 |
| | | Upstream | -598 |
| | | Upstream | -757 |
| | | Upstream | -758 |
Matrix_3 | WRKY48 | Not available | Upstream | -757 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -713 |
| | | Upstream | -714 |
| | | Upstream | -715 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -711 |
Matrix_322 | NST3;ANAC015;BRN2 | Not available | Upstream | -737 |
| | | Upstream | -738 |
Matrix_331 | GBF1 | Not available | Upstream | -67 |
| | | Upstream | -712 |
| | | Upstream | -713 |
Matrix_332 | SPT;ALC | Not available | Upstream | -713 |
| | | Upstream | -714 |
| | | Upstream | -715 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1907 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -1906 |
| | | Upstream | -1907 |
Matrix_345 | POC1 | Not available | Upstream | -709 |
| | | Upstream | -710 |
Matrix_348 | AT5G51910 | Not available | Upstream | -598 |
| | | Upstream | -599 |
| | | Upstream | -600 |
| | | Upstream | -758 |
| | | Upstream | -759 |
| | | Upstream | -760 |
Matrix_360 | ORA59 | Not available | Upstream | -1906 |
| | | Upstream | -1907 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -1905 |
| | | Upstream | -1906 |
Matrix_378 | ATERF1 | Not available | Upstream | -1907 |
| | | Upstream | -1908 |
Matrix_405 | DREB2C | Not available | Upstream | -1906 |
Matrix_406 | ATERF-7 | Not available | Upstream | -1906 |
| | | Upstream | -1907 |
Matrix_42 | AT2G45680 | Not available | Upstream | -598 |
| | | Upstream | -599 |
| | | Upstream | -758 |
| | | Upstream | -759 |
Matrix_420 | ANAC58 | Not available | Upstream | -737 |
Matrix_44 | CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2 | Not available | Upstream | -738 |
| | | Upstream | -739 |
Matrix_462 | ATERF-8 | Not available | Upstream | -1906 |
| | | Upstream | -1907 |
Matrix_473 | RRTF1 | Not available | Upstream | -1907 |
| | | Upstream | -1908 |
Matrix_484 | ATERF13 | Not available | Upstream | -1906 |
| | | Upstream | -1907 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -1905 |
| | | Upstream | -1906 |
Matrix_505 | GATA8 | Not available | Upstream | -93 |
Matrix_507 | TCP3 | Not available | Upstream | -600 |
| | | Upstream | -601 |
| | | Upstream | -757 |
| | | Upstream | -758 |
Matrix_55 | PIF3 | Not available | Upstream | -712 |
| | | Upstream | -713 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1908 |
| | | Upstream | -1909 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -714 |
Matrix_63 | ARR10 | Not available | Upstream | -93 |
Matrix_64 | PIF5 | Not available | Upstream | -714 |
Matrix_82 | TCP17 | Not available | Upstream | -758 |
| | | Upstream | -759 |
Matrix_94 | TCP5 | Not available | Upstream | -758 |
| | | Upstream | -759 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -472 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -722 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -715 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -715 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -714 |
| | | Upstream | -715 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -713 |
| | | Upstream | -715 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -1907 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -1879 |
| | | Upstream | -1923 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -69 |
| | | Upstream | -715 |
| | | Upstream | -881 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -727 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -468 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Upstream | -348 |
| | | Upstream | -973 |
| | | Upstream | -980 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -385 |
Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | Upstream | -1887 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -714 |
| | | Upstream | -715 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -1882 |
| | | Upstream | -1926 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -714 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -1902 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -1952 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -458 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -1943 |
| | | Upstream | -1966 |
Motif_668 | TCA1MOTIF | TCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoter | Upstream | -452 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -1943 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -460 |