View conserved binding sites


Gene
CM00007G09120
Description
SHI RELATED SEQUENCE
Alias
MELO3C007877;MELO3C007877T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-480
Upstream-481
Matrix_104PINot availableUpstream-812
Upstream-813
Matrix_113ABI5Not availableUpstream-814
Upstream-815
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-809
Upstream-810
Upstream-811
Matrix_119RRTF1Not availableUpstream-481
Upstream-482
Matrix_120BEE2Not availableUpstream-813
Matrix_122ABF1;AREB2Not availableUpstream-813
Upstream-814
Matrix_129ABF1Not availableUpstream-813
Upstream-814
Matrix_138RRTF1Not availableUpstream-75
Upstream-481
Upstream-482
Matrix_145GBF4;AT5G44080Not availableUpstream-814
Upstream-815
Matrix_146ORA47Not availableUpstream-76
Matrix_147ERF3;AT1G80580Not availableUpstream-482
Upstream-483
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-809
Upstream-810
Matrix_156POC1Not availableUpstream-812
Upstream-813
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-813
Matrix_181Dof5.7Not availableUpstream-905
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-810
Matrix_192FHY3/FAR1Not availableUpstream-814
Upstream-815
Matrix_194HYH;HY5Not availableUpstream-810
Upstream-811
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-813
Upstream-814
Matrix_224ERF1Not availableUpstream-481
Upstream-482
Matrix_234RAP2.3Not availableUpstream-76
Upstream-77
Upstream-480
Upstream-481
Matrix_24POC1Not availableUpstream-809
Upstream-810
Matrix_247PIF3Not availableUpstream-813
Upstream-814
Matrix_252RAP2.6Not availableUpstream-76
Matrix_261ATERF-1Not availableUpstream-481
Upstream-482
Matrix_264ATAREB1Not availableUpstream-813
Upstream-814
Matrix_277RAP2.6Not availableUpstream-481
Upstream-482
Matrix_285DDF1Not availableUpstream-482
Upstream-483
Matrix_287ERF2Not availableUpstream-480
Upstream-481
Matrix_288RAP2.3Not availableUpstream-75
Upstream-481
Upstream-482
Matrix_295ERF1Not availableUpstream-482
Upstream-483
Matrix_296GBF2Not availableUpstream-814
Upstream-815
Matrix_300bZIP68;bZIP16Not availableUpstream-814
Upstream-815
Matrix_301PIL5Not availableUpstream-814
Upstream-815
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-481
Upstream-482
Matrix_330MYC2;TT8Not availableUpstream-813
Matrix_331GBF1Not availableUpstream-814
Upstream-815
Matrix_332SPT;ALCNot availableUpstream-813
Upstream-814
Matrix_334AT3G23230Not availableUpstream-481
Upstream-482
Matrix_338AP2Not availableUpstream-810
Upstream-811
Matrix_343AT2G33710Not availableUpstream-76
Upstream-480
Upstream-481
Matrix_345POC1Not availableUpstream-809
Upstream-810
Matrix_355ERF10;ERF11Not availableUpstream-481
Upstream-482
Matrix_356PRR5Not availableUpstream-806
Upstream-807
Matrix_360ORA59Not availableUpstream-482
Upstream-483
Matrix_363RAP2.3Not availableUpstream-75
Upstream-481
Upstream-482
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-199
Upstream-200
Matrix_378ATERF1Not availableUpstream-76
Upstream-480
Upstream-481
Matrix_389ILR3Not availableUpstream-813
Upstream-814
Matrix_406ATERF-7Not availableUpstream-482
Upstream-483
Matrix_41anac058Not availableIntron662
Matrix_414AGL15Not availableUpstream-405
Upstream-509
Upstream-514
Upstream-536
Matrix_426CRF1;CRF2Not availableUpstream-481
Upstream-482
Matrix_439AP3Not availableUpstream-756
Matrix_443AGL15Not availableUpstream-811
Upstream-812
Matrix_45DRNNot availableUpstream-482
Upstream-483
Matrix_462ATERF-8Not availableUpstream-482
Upstream-483
Matrix_465MYC4Not availableUpstream-813
Matrix_473RRTF1Not availableUpstream-76
Upstream-480
Upstream-481
Matrix_48PINot availableUpstream-467
Upstream-468
Upstream-1645
Matrix_480BES1Not availableUpstream-812
Upstream-813
Upstream-814
Matrix_484ATERF13Not availableUpstream-482
Upstream-483
Matrix_488ABF1Not availableUpstream-470
Upstream-471
Upstream-805
Upstream-806
Matrix_493AT1G22985;AT1G71130Not availableUpstream-481
Upstream-482
Matrix_50ATERF14;AT5G43410Not availableUpstream-481
Upstream-482
Matrix_506DRNL;ATERF-4Not availableUpstream-481
Upstream-482
Matrix_517ERF12Not availableUpstream-482
Upstream-483
Matrix_55PIF3Not availableUpstream-812
Upstream-813
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-481
Upstream-482
Matrix_7PIF4Not availableUpstream-813
Upstream-814
Matrix_77PRR5Not availableUpstream-812
Upstream-813
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-481
Upstream-482
Matrix_91CRF3Not availableUpstream-481
Upstream-482
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-373
Upstream-586
Motif_12CEREGLUBOX2PSLEGAcereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)Upstream-580
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-940
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-916
Upstream-922
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-382
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-815
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-815
Motif_197HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-813
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-357
Upstream-814
Upstream-815
Motif_244ABRE-like binding site motifNot availableUpstream-815
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-815
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityDownstream2071
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-928
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-873
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesDownstream2069
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-483
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-914
Upstream-920
Upstream-929
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-815
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-913
Upstream-919
Upstream-925
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-874
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-814
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-835
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-336
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneUpstream-30
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-461
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-908
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream1630
Downstream1629
Downstream1191
Downstream1190
Upstream-206
Upstream-912
Upstream-918
Upstream-924
Upstream-1663
Upstream-1664
Upstream-1665
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-816
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREDownstream2074
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-864
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1185
Upstream-205
Upstream-414
Upstream-858
Upstream-1657
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream1185
Upstream-205
Upstream-414
Upstream-858
Upstream-1657
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-973
Upstream-975
Upstream-977
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-816
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-823