View conserved binding sites


Gene
CM00007G08310
Description
receptor-like kinase protein FLORAL ORGAN NUMBER1
Alias
MELO3C007800;MELO3C007800T1
Binding siteNameDescriptionLocationPosition
Matrix_184AGL15Not availableDownstream5603
Matrix_396AP3Not availableUpstream-24
Upstream-25
Upstream-80
Upstream-552
Matrix_406ATERF-7Not availableUpstream-430
Matrix_414AGL15Not availableUpstream-149
Upstream-336
Matrix_45DRNNot availableUpstream-430
Matrix_462ATERF-8Not availableUpstream-430
Matrix_48PINot availableUpstream-150
Upstream-323
Matrix_488ABF1Not availableUpstream-364
Matrix_74LFYNot availableDownstream5603
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-385
Upstream-387
Upstream-389
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Downstream5600
Upstream-213
Motif_183TRANSINITDICOTSContext sequence of translational initiation codon in dicotsUpstream-215
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream5594
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionUpstream-19
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-25
Upstream-552
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementDownstream5657
Upstream-3
Upstream-494
Upstream-500
Motif_30HSELIKENTACIDICPR1HSE-like motif in -56 region of acidic PR1 gene of tobacco; not found in basic PR1 geneDownstream5683
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-25
Upstream-80
Upstream-553
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-494
Upstream-500
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationDownstream5627
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream5603
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-385
Upstream-387
Upstream-389
Upstream-391
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-16
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-215
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-30
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceDownstream5648
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream5602
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream5628
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-229
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream5680
Downstream5666
Upstream-19
Upstream-20
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream5602
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream5666
Upstream-20
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-123
Upstream-125
Upstream-127
Upstream-129
Upstream-385
Upstream-387
Upstream-389
Upstream-391
Upstream-393
Upstream-395
Upstream-397
Upstream-399
Upstream-483
Upstream-485
Upstream-487
Upstream-489
Upstream-505