Matrix_101 | ERF5 | Not available | Upstream | -531 |
Matrix_119 | RRTF1 | Not available | Upstream | -532 |
Matrix_138 | RRTF1 | Not available | Upstream | -532 |
Matrix_146 | ORA47 | Not available | Upstream | -531 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -533 |
| | | Upstream | -534 |
Matrix_190 | ATERF1 | Not available | Upstream | -530 |
| | | Upstream | -531 |
| | | Upstream | -532 |
Matrix_224 | ERF1 | Not available | Upstream | -532 |
| | | Upstream | -533 |
Matrix_234 | RAP2.3 | Not available | Upstream | -530 |
| | | Upstream | -531 |
Matrix_242 | AT2G25820;AT3G16280;AT4G32800;TINY2;tny | Not available | Upstream | -1470 |
Matrix_244 | DREB2C | Not available | Upstream | -1469 |
Matrix_25 | AP3 | Not available | Upstream | -541 |
| | | Upstream | -542 |
Matrix_252 | RAP2.6 | Not available | Upstream | -531 |
Matrix_261 | ATERF-1 | Not available | Upstream | -532 |
Matrix_272 | DEAR4 | Not available | Upstream | -531 |
Matrix_287 | ERF2 | Not available | Upstream | -531 |
Matrix_288 | RAP2.3 | Not available | Upstream | -532 |
Matrix_295 | ERF1 | Not available | Upstream | -533 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -532 |
Matrix_334 | AT3G23230 | Not available | Upstream | -532 |
Matrix_343 | AT2G33710 | Not available | Upstream | -531 |
Matrix_35 | YAB5;YAB3 | Not available | Upstream | -1507 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -532 |
Matrix_360 | ORA59 | Not available | Upstream | -533 |
Matrix_363 | RAP2.3 | Not available | Upstream | -532 |
Matrix_378 | ATERF1 | Not available | Upstream | -531 |
| | | Upstream | -532 |
Matrix_385 | DEAR4 | Not available | Upstream | -1469 |
Matrix_394 | DREB_U | Not available | Upstream | -1469 |
Matrix_406 | ATERF-7 | Not available | Upstream | -533 |
| | | Upstream | -534 |
Matrix_409 | DEAR3 | Not available | Upstream | -532 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -532 |
Matrix_45 | DRN | Not available | Upstream | -533 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -1469 |
Matrix_462 | ATERF-8 | Not available | Upstream | -533 |
Matrix_473 | RRTF1 | Not available | Upstream | -530 |
| | | Upstream | -531 |
| | | Upstream | -532 |
Matrix_478 | AT1G01250 | Not available | Upstream | -1470 |
Matrix_484 | ATERF13 | Not available | Upstream | -533 |
| | | Upstream | -534 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -532 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -532 |
| | | Upstream | -533 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -532 |
Matrix_517 | ERF12 | Not available | Upstream | -533 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Upstream | -1470 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -532 |
Matrix_91 | CRF3 | Not available | Upstream | -532 |
Matrix_92 | AT1G33760 | Not available | Upstream | -1469 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -1276 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -501 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Downstream | 7918 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -501 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -1872 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -1637 |
| | | Upstream | -1640 |
| | | Upstream | -1643 |
| | | Upstream | -1646 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 7909 |
| | | Downstream | 7903 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -534 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -501 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -1876 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -1470 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -286 |
| | | Upstream | -294 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -1470 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -1871 |
Motif_530 | CPBCSPOR | The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene | Upstream | -1874 |
Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | Upstream | -1470 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -550 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -1470 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Upstream | -1470 |
Motif_653 | INTRONLOWER | 3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns | Upstream | -634 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 7902 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -1277 |