View conserved binding sites


Gene
CM00007G08110
Description
U-box domain-containing protein 12
Alias
MELO3C007781;MELO3C007781T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-531
Matrix_119RRTF1Not availableUpstream-532
Matrix_138RRTF1Not availableUpstream-532
Matrix_146ORA47Not availableUpstream-531
Matrix_147ERF3;AT1G80580Not availableUpstream-533
Upstream-534
Matrix_190ATERF1Not availableUpstream-530
Upstream-531
Upstream-532
Matrix_224ERF1Not availableUpstream-532
Upstream-533
Matrix_234RAP2.3Not availableUpstream-530
Upstream-531
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-1470
Matrix_244DREB2CNot availableUpstream-1469
Matrix_25AP3Not availableUpstream-541
Upstream-542
Matrix_252RAP2.6Not availableUpstream-531
Matrix_261ATERF-1Not availableUpstream-532
Matrix_272DEAR4Not availableUpstream-531
Matrix_287ERF2Not availableUpstream-531
Matrix_288RAP2.3Not availableUpstream-532
Matrix_295ERF1Not availableUpstream-533
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-532
Matrix_334AT3G23230Not availableUpstream-532
Matrix_343AT2G33710Not availableUpstream-531
Matrix_35YAB5;YAB3Not availableUpstream-1507
Matrix_355ERF10;ERF11Not availableUpstream-532
Matrix_360ORA59Not availableUpstream-533
Matrix_363RAP2.3Not availableUpstream-532
Matrix_378ATERF1Not availableUpstream-531
Upstream-532
Matrix_385DEAR4Not availableUpstream-1469
Matrix_394DREB_UNot availableUpstream-1469
Matrix_406ATERF-7Not availableUpstream-533
Upstream-534
Matrix_409DEAR3Not availableUpstream-532
Matrix_426CRF1;CRF2Not availableUpstream-532
Matrix_45DRNNot availableUpstream-533
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-1469
Matrix_462ATERF-8Not availableUpstream-533
Matrix_473RRTF1Not availableUpstream-530
Upstream-531
Upstream-532
Matrix_478AT1G01250Not availableUpstream-1470
Matrix_484ATERF13Not availableUpstream-533
Upstream-534
Matrix_493AT1G22985;AT1G71130Not availableUpstream-532
Matrix_50ATERF14;AT5G43410Not availableUpstream-532
Upstream-533
Matrix_506DRNL;ATERF-4Not availableUpstream-532
Matrix_517ERF12Not availableUpstream-533
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-1470
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-532
Matrix_91CRF3Not availableUpstream-532
Matrix_92AT1G33760Not availableUpstream-1469
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-1276
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-501
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream7918
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-501
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-1872
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-1637
Upstream-1640
Upstream-1643
Upstream-1646
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream7909
Downstream7903
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-534
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-501
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-1876
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-1470
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-286
Upstream-294
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-1470
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-1871
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneUpstream-1874
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-1470
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-550
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-1470
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-1470
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-634
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream7902
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-1277