Matrix_101 | ERF5 | Not available | Upstream | -706 |
| | | Upstream | -707 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Downstream | 1576 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -706 |
| | | Upstream | -707 |
Matrix_151 | ASIL1 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -705 |
| | | Upstream | -706 |
| | | Upstream | -707 |
| | | Upstream | -708 |
Matrix_206 | CUC1;ANAC100 | Not available | Upstream | -645 |
| | | Upstream | -646 |
Matrix_227 | AT1G64620 | Not available | Upstream | -498 |
Matrix_25 | AP3 | Not available | Upstream | -825 |
| | | Upstream | -826 |
Matrix_320 | MYC4 | Not available | Downstream | 1575 |
Matrix_323 | BIM3 | Not available | Downstream | 1576 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -706 |
| | | Upstream | -707 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_389 | ILR3 | Not available | Downstream | 1576 |
Matrix_406 | ATERF-7 | Not available | Upstream | -704 |
| | | Upstream | -705 |
Matrix_41 | anac058 | Not available | Upstream | -645 |
Matrix_414 | AGL15 | Not available | Upstream | -819 |
| | | Upstream | -1288 |
| | | Upstream | -1290 |
Matrix_433 | ATERF1 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_448 | ATERF6 | Not available | Upstream | -705 |
| | | Upstream | -706 |
Matrix_45 | DRN | Not available | Upstream | -706 |
| | | Upstream | -707 |
Matrix_462 | ATERF-8 | Not available | Upstream | -704 |
| | | Upstream | -705 |
Matrix_484 | ATERF13 | Not available | Upstream | -706 |
| | | Upstream | -707 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -706 |
| | | Upstream | -707 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Downstream | 1575 |
Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | Upstream | -566 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -530 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -1187 |
| | | Upstream | -1189 |
| | | Upstream | -1191 |
| | | Upstream | -1193 |
| | | Upstream | -1295 |
| | | Upstream | -1297 |
| | | Upstream | -1299 |
| | | Upstream | -1301 |
| | | Upstream | -1303 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -553 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -558 |
Motif_190 | WUSATAg | Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis | Upstream | -584 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -655 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -370 |
| | | Upstream | -457 |
| | | Upstream | -805 |
| | | Upstream | -894 |
| | | Upstream | -928 |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | Upstream | -1748 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -800 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -571 |
Motif_383 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -271 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -1187 |
| | | Upstream | -1189 |
| | | Upstream | -1191 |
| | | Upstream | -1193 |
| | | Upstream | -1195 |
| | | Upstream | -1295 |
| | | Upstream | -1297 |
| | | Upstream | -1299 |
| | | Upstream | -1301 |
| | | Upstream | -1303 |
| | | Upstream | -1305 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -751 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -711 |
| | | Upstream | -1633 |
Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -271 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -567 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -559 |
| | | Upstream | -743 |
| | | Upstream | -824 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -559 |
| | | Upstream | -824 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -311 |
| | | Upstream | -313 |
| | | Upstream | -315 |
| | | Upstream | -1305 |
| | | Upstream | -1307 |
| | | Upstream | -1309 |
| | | Upstream | -1311 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -590 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -730 |