View conserved binding sites


Gene
CM00007G06580
Description
Protein SHORT-ROOT
Alias
MELO3C007630;MELO3C007630T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-706
Upstream-707
Matrix_14ZCW32;AT5G62610Not availableDownstream1576
Matrix_147ERF3;AT1G80580Not availableUpstream-706
Upstream-707
Matrix_151ASIL1Not availableUpstream-705
Upstream-706
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-705
Upstream-706
Upstream-707
Upstream-708
Matrix_206CUC1;ANAC100Not availableUpstream-645
Upstream-646
Matrix_227AT1G64620Not availableUpstream-498
Matrix_25AP3Not availableUpstream-825
Upstream-826
Matrix_320MYC4Not availableDownstream1575
Matrix_323BIM3Not availableDownstream1576
Matrix_344ATERF15;AT4G18450Not availableUpstream-706
Upstream-707
Matrix_355ERF10;ERF11Not availableUpstream-705
Upstream-706
Matrix_374AT5G07580;AT5G61590Not availableUpstream-705
Upstream-706
Matrix_389ILR3Not availableDownstream1576
Matrix_406ATERF-7Not availableUpstream-704
Upstream-705
Matrix_41anac058Not availableUpstream-645
Matrix_414AGL15Not availableUpstream-819
Upstream-1288
Upstream-1290
Matrix_433ATERF1Not availableUpstream-705
Upstream-706
Matrix_448ATERF6Not availableUpstream-705
Upstream-706
Matrix_45DRNNot availableUpstream-706
Upstream-707
Matrix_462ATERF-8Not availableUpstream-704
Upstream-705
Matrix_484ATERF13Not availableUpstream-706
Upstream-707
Matrix_5AT5G51190;ERF104Not availableUpstream-706
Upstream-707
Matrix_60AT1G01260;AT5G57150Not availableDownstream1575
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-566
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-530
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-1187
Upstream-1189
Upstream-1191
Upstream-1193
Upstream-1295
Upstream-1297
Upstream-1299
Upstream-1301
Upstream-1303
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-553
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-558
Motif_190WUSATAgTarget sequence of WUS in the intron of AGAMOUS gene in ArabidopsisUpstream-584
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-655
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-370
Upstream-457
Upstream-805
Upstream-894
Upstream-928
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-1748
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-800
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-571
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-271
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-1187
Upstream-1189
Upstream-1191
Upstream-1193
Upstream-1195
Upstream-1295
Upstream-1297
Upstream-1299
Upstream-1301
Upstream-1303
Upstream-1305
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-751
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-711
Upstream-1633
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-271
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-567
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-559
Upstream-743
Upstream-824
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-559
Upstream-824
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-311
Upstream-313
Upstream-315
Upstream-1305
Upstream-1307
Upstream-1309
Upstream-1311
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-590
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-730