View conserved binding sites


Gene
CM00007G05160
Description
protein ligase RKP
Alias
MELO3C007488;MELO3C007488T1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-876
Upstream-1768
Matrix_109GBF3Not availableUpstream-901
Upstream-902
Upstream-1768
Matrix_111ABF3Not availableUpstream-877
Upstream-878
Matrix_113ABI5Not availableUpstream-876
Upstream-877
Upstream-878
Upstream-1768
Upstream-1770
Matrix_122ABF1;AREB2Not availableUpstream-876
Upstream-877
Upstream-1769
Matrix_129ABF1Not availableUpstream-877
Upstream-1769
Matrix_134ABF1Not availableUpstream-877
Upstream-878
Upstream-1769
Matrix_146ORA47Not availableUpstream-678
Matrix_147ERF3;AT1G80580Not availableUpstream-678
Matrix_166TGA4Not availableUpstream-899
Upstream-900
Matrix_192FHY3/FAR1Not availableUpstream-874
Upstream-877
Upstream-878
Upstream-901
Upstream-902
Upstream-1766
Matrix_194HYH;HY5Not availableUpstream-874
Upstream-1766
Matrix_214AP1Not availableUpstream-1767
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-901
Upstream-902
Upstream-1045
Upstream-1766
Matrix_224ERF1Not availableUpstream-677
Matrix_23ANAC46Not availableUpstream-906
Matrix_234RAP2.3Not availableUpstream-674
Upstream-675
Matrix_261ATERF-1Not availableUpstream-678
Matrix_264ATAREB1Not availableUpstream-874
Upstream-877
Upstream-1766
Upstream-1769
Matrix_272DEAR4Not availableUpstream-678
Matrix_278AtbZIP44Not availableUpstream-899
Upstream-900
Matrix_284KAN2;KAN3;KAN;KAN4Not availableDownstream10052
Matrix_288RAP2.3Not availableUpstream-677
Matrix_295ERF1Not availableUpstream-678
Matrix_296GBF2Not availableUpstream-901
Upstream-902
Upstream-1769
Matrix_300bZIP68;bZIP16Not availableUpstream-901
Upstream-902
Upstream-1769
Matrix_301PIL5Not availableUpstream-872
Upstream-1764
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-897
Upstream-898
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-677
Matrix_331GBF1Not availableUpstream-901
Upstream-902
Upstream-1768
Matrix_334AT3G23230Not availableUpstream-679
Matrix_338AP2Not availableUpstream-874
Upstream-1766
Matrix_343AT2G33710Not availableUpstream-674
Upstream-675
Matrix_355ERF10;ERF11Not availableUpstream-677
Matrix_356PRR5Not availableUpstream-870
Upstream-874
Upstream-1762
Upstream-1766
Matrix_359FLCNot availableUpstream-1767
Matrix_360ORA59Not availableUpstream-678
Matrix_363RAP2.3Not availableUpstream-677
Matrix_378ATERF1Not availableUpstream-674
Upstream-675
Matrix_396AP3Not availableUpstream-854
Upstream-855
Matrix_399TGA1Not availableUpstream-898
Upstream-899
Matrix_403BZR1Not availableUpstream-875
Upstream-1767
Matrix_405DREB2CNot availableUpstream-947
Matrix_406ATERF-7Not availableUpstream-676
Matrix_409DEAR3Not availableUpstream-677
Matrix_426CRF1;CRF2Not availableUpstream-679
Matrix_429KAN4Not availableDownstream10052
Matrix_438AtbZIP63Not availableUpstream-898
Upstream-899
Upstream-1769
Matrix_443AGL15Not availableUpstream-875
Upstream-1767
Matrix_45DRNNot availableUpstream-678
Matrix_456bZIP60Not availableUpstream-900
Upstream-901
Matrix_457TGA2Not availableUpstream-898
Upstream-899
Matrix_462ATERF-8Not availableUpstream-676
Matrix_471KAN4Not availableDownstream10051
Matrix_473RRTF1Not availableUpstream-674
Upstream-675
Matrix_48PINot availableUpstream-746
Matrix_480BES1Not availableUpstream-1768
Matrix_484ATERF13Not availableUpstream-678
Matrix_488ABF1Not availableUpstream-900
Upstream-1043
Upstream-1761
Matrix_50ATERF14;AT5G43410Not availableUpstream-677
Matrix_506DRNL;ATERF-4Not availableUpstream-679
Matrix_517ERF12Not availableUpstream-678
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-899
Upstream-900
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-677
Matrix_7PIF4Not availableUpstream-1769
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-679
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAIntron9142
Motif_131P1BSPHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtiiDownstream10051
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-345
Upstream-878
Upstream-1770
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-823
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-823
Upstream-878
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-877
Upstream-878
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-823
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-855
Motif_244ABRE-like binding site motifNot availableUpstream-876
Upstream-878
Upstream-902
Upstream-1045
Upstream-1768
Upstream-1770
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-877
Upstream-878
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream10052
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-846
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream10113
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-678
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-823
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-878
Upstream-902
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisDownstream10080
Motif_347OPAQUE2ZMB32opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)Upstream-899
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-855
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-901
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-87
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-901
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron9142
Intron9140
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsDownstream10047
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-901
Motif_489SORLREP3ATone of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataDownstream10060
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-903
Upstream-1046
Upstream-1768
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-901
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-892
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-876
Upstream-879
Upstream-903
Upstream-1046
Upstream-1768
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-901
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron9143
Intron9141
Intron9139
Intron9137
Intron9135
Intron9133
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-876
Upstream-879
Motif_95UPRE2ATXBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPRUpstream-899