View conserved binding sites


Gene
CM00007G02890
Description
Ethylene-responsive transcription factor
Alias
MELO3C007267;MELO3C007267T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-375
Matrix_104PINot availableDownstream1209
Downstream1285
Matrix_113ABI5Not availableUpstream-1576
Downstream1209
Downstream1285
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorDownstream1206
Downstream1207
Downstream1462
Downstream1463
Downstream1562
Matrix_122ABF1;AREB2Not availableDownstream1209
Downstream1285
Downstream1465
Matrix_129ABF1Not availableDownstream1210
Downstream1286
Matrix_133DYT1Not availableUpstream-1576
Matrix_134ABF1Not availableDownstream1286
Matrix_14ZCW32;AT5G62610Not availableUpstream-1576
Matrix_145GBF4;AT5G44080Not availableDownstream1211
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1581
Matrix_156POC1Not availableDownstream1211
Matrix_171LBD3;LBD4Not availableUpstream-1652
Matrix_181Dof5.7Not availableUpstream-369
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1653
Matrix_190ATERF1Not availableUpstream-1652
Matrix_194HYH;HY5Not availableDownstream1207
Matrix_224ERF1Not availableDownstream1303
Downstream1306
Downstream1475
Matrix_24POC1Not availableUpstream-1581
Matrix_243RAP2.12;RAP2.2Not availableDownstream1303
Downstream1305
Downstream1477
Matrix_247PIF3Not availableDownstream1210
Matrix_252RAP2.6Not availableUpstream-1666
Matrix_264ATAREB1Not availableDownstream1207
Downstream1210
Downstream1283
Downstream1286
Downstream1463
Matrix_277RAP2.6Not availableUpstream-374
Matrix_287ERF2Not availableUpstream-375
Downstream1302
Downstream1304
Downstream1476
Matrix_295ERF1Not availableUpstream-373
Matrix_300bZIP68;bZIP16Not availableDownstream1210
Matrix_334AT3G23230Not availableDownstream1303
Downstream1305
Matrix_338AP2Not availableDownstream1207
Downstream1283
Matrix_344ATERF15;AT4G18450Not availableDownstream1304
Downstream1476
Matrix_356PRR5Not availableDownstream1207
Downstream1283
Downstream1463
Matrix_360ORA59Not availableDownstream1307
Downstream1476
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusDownstream1003
Downstream1354
Matrix_374AT5G07580;AT5G61590Not availableDownstream1303
Downstream1304
Downstream1307
Downstream1476
Matrix_405DREB2CNot availableDownstream1477
Matrix_406ATERF-7Not availableUpstream-373
Matrix_443AGL15Not availableDownstream1208
Downstream1284
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableDownstream1303
Matrix_476bHLH115;bHLH34Not availableUpstream-1576
Matrix_484ATERF13Not availableDownstream1304
Downstream1307
Downstream1476
Matrix_49FHY3/FAR1Not availableUpstream-1656
Matrix_493AT1G22985;AT1G71130Not availableDownstream1303
Downstream1304
Matrix_50ATERF14;AT5G43410Not availableUpstream-374
Downstream1303
Downstream1306
Downstream1475
Matrix_57WIN1;SHN3;SHN2Not availableDownstream1303
Matrix_7PIF4Not availableDownstream1212
Downstream1466
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-1501
Upstream-1499
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-430
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-430
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-470
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-371
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-372
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-469
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-373
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-358
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-1501
Upstream-1499
Upstream-1497
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-430
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1685
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream1006
Downstream1007
Downstream1008
Downstream1009
Downstream1010
Downstream1011
Downstream1012
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-1574
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-396
Upstream-325
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-325
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-1501
Upstream-1499
Upstream-1497
Upstream-1495
Upstream-1493
Upstream-1491
Upstream-321