Matrix_101 | ERF5 | Not available | Upstream | -375 |
Matrix_104 | PI | Not available | Downstream | 1209 |
| | | Downstream | 1285 |
Matrix_113 | ABI5 | Not available | Upstream | -1576 |
| | | Downstream | 1209 |
| | | Downstream | 1285 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Downstream | 1206 |
| | | Downstream | 1207 |
| | | Downstream | 1462 |
| | | Downstream | 1463 |
| | | Downstream | 1562 |
Matrix_122 | ABF1;AREB2 | Not available | Downstream | 1209 |
| | | Downstream | 1285 |
| | | Downstream | 1465 |
Matrix_129 | ABF1 | Not available | Downstream | 1210 |
| | | Downstream | 1286 |
Matrix_133 | DYT1 | Not available | Upstream | -1576 |
Matrix_134 | ABF1 | Not available | Downstream | 1286 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -1576 |
Matrix_145 | GBF4;AT5G44080 | Not available | Downstream | 1211 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1581 |
Matrix_156 | POC1 | Not available | Downstream | 1211 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -1652 |
Matrix_181 | Dof5.7 | Not available | Upstream | -369 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1653 |
Matrix_190 | ATERF1 | Not available | Upstream | -1652 |
Matrix_194 | HYH;HY5 | Not available | Downstream | 1207 |
Matrix_224 | ERF1 | Not available | Downstream | 1303 |
| | | Downstream | 1306 |
| | | Downstream | 1475 |
Matrix_24 | POC1 | Not available | Upstream | -1581 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Downstream | 1303 |
| | | Downstream | 1305 |
| | | Downstream | 1477 |
Matrix_247 | PIF3 | Not available | Downstream | 1210 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1666 |
Matrix_264 | ATAREB1 | Not available | Downstream | 1207 |
| | | Downstream | 1210 |
| | | Downstream | 1283 |
| | | Downstream | 1286 |
| | | Downstream | 1463 |
Matrix_277 | RAP2.6 | Not available | Upstream | -374 |
Matrix_287 | ERF2 | Not available | Upstream | -375 |
| | | Downstream | 1302 |
| | | Downstream | 1304 |
| | | Downstream | 1476 |
Matrix_295 | ERF1 | Not available | Upstream | -373 |
Matrix_300 | bZIP68;bZIP16 | Not available | Downstream | 1210 |
Matrix_334 | AT3G23230 | Not available | Downstream | 1303 |
| | | Downstream | 1305 |
Matrix_338 | AP2 | Not available | Downstream | 1207 |
| | | Downstream | 1283 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Downstream | 1304 |
| | | Downstream | 1476 |
Matrix_356 | PRR5 | Not available | Downstream | 1207 |
| | | Downstream | 1283 |
| | | Downstream | 1463 |
Matrix_360 | ORA59 | Not available | Downstream | 1307 |
| | | Downstream | 1476 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Downstream | 1003 |
| | | Downstream | 1354 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Downstream | 1303 |
| | | Downstream | 1304 |
| | | Downstream | 1307 |
| | | Downstream | 1476 |
Matrix_405 | DREB2C | Not available | Downstream | 1477 |
Matrix_406 | ATERF-7 | Not available | Upstream | -373 |
Matrix_443 | AGL15 | Not available | Downstream | 1208 |
| | | Downstream | 1284 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Downstream | 1303 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -1576 |
Matrix_484 | ATERF13 | Not available | Downstream | 1304 |
| | | Downstream | 1307 |
| | | Downstream | 1476 |
Matrix_49 | FHY3/FAR1 | Not available | Upstream | -1656 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Downstream | 1303 |
| | | Downstream | 1304 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -374 |
| | | Downstream | 1303 |
| | | Downstream | 1306 |
| | | Downstream | 1475 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Downstream | 1303 |
Matrix_7 | PIF4 | Not available | Downstream | 1212 |
| | | Downstream | 1466 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -1501 |
| | | Upstream | -1499 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -430 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -430 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -470 |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -371 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -372 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -469 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -373 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -358 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -1501 |
| | | Upstream | -1499 |
| | | Upstream | -1497 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -430 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1685 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Downstream | 1006 |
| | | Downstream | 1007 |
| | | Downstream | 1008 |
| | | Downstream | 1009 |
| | | Downstream | 1010 |
| | | Downstream | 1011 |
| | | Downstream | 1012 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -1574 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -396 |
| | | Upstream | -325 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -325 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -1501 |
| | | Upstream | -1499 |
| | | Upstream | -1497 |
| | | Upstream | -1495 |
| | | Upstream | -1493 |
| | | Upstream | -1491 |
| | | Upstream | -321 |