Matrix_101 | ERF5 | Not available | Upstream | -33 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Downstream | 6281 |
Matrix_132 | SOC1 | Not available | Upstream | -232 |
| | | Upstream | -260 |
| | | Upstream | -267 |
Matrix_146 | ORA47 | Not available | Upstream | -965 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -34 |
Matrix_247 | PIF3 | Not available | Downstream | 6278 |
Matrix_25 | AP3 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_261 | ATERF-1 | Not available | Upstream | -34 |
Matrix_287 | ERF2 | Not available | Upstream | -36 |
Matrix_288 | RAP2.3 | Not available | Upstream | -966 |
Matrix_296 | GBF2 | Not available | Downstream | 6277 |
Matrix_300 | bZIP68;bZIP16 | Not available | Downstream | 6277 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -966 |
Matrix_334 | AT3G23230 | Not available | Upstream | -37 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -35 |
Matrix_345 | POC1 | Not available | Downstream | 6281 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -966 |
Matrix_406 | ATERF-7 | Not available | Upstream | -36 |
| | | Upstream | -1032 |
Matrix_407 | AP1 | Not available | Intron | 427 |
Matrix_409 | DEAR3 | Not available | Upstream | -966 |
Matrix_462 | ATERF-8 | Not available | Upstream | -36 |
| | | Upstream | -967 |
Matrix_48 | PI | Not available | Upstream | -23 |
| | | Upstream | -215 |
Matrix_484 | ATERF13 | Not available | Upstream | -35 |
Matrix_488 | ABF1 | Not available | Downstream | 6279 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -966 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -35 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -966 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -966 |
Matrix_91 | CRF3 | Not available | Upstream | -966 |
Motif_150 | RBCSCONSENSUS | rbcS general consensus sequence; AATCCAA or AATCCAAC | Downstream | 6336 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Downstream | 6255 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Downstream | 6184 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 6255 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 6255 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 6286 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 6232 |
| | | Upstream | -291 |
| | | Upstream | -299 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -290 |
| | | Upstream | -298 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Downstream | 6255 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -109 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -114 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -294 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Downstream | 6235 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Downstream | 6308 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -296 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -165 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -1732 |