View conserved binding sites


Gene
CM00007G01810
Description
No description available
Alias
MELO3C007162;MELO3C007162T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-33
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorDownstream6281
Matrix_132SOC1Not availableUpstream-232
Upstream-260
Upstream-267
Matrix_146ORA47Not availableUpstream-965
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-34
Matrix_247PIF3Not availableDownstream6278
Matrix_25AP3Not availableUpstream-156
Upstream-157
Matrix_261ATERF-1Not availableUpstream-34
Matrix_287ERF2Not availableUpstream-36
Matrix_288RAP2.3Not availableUpstream-966
Matrix_296GBF2Not availableDownstream6277
Matrix_300bZIP68;bZIP16Not availableDownstream6277
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-966
Matrix_334AT3G23230Not availableUpstream-37
Matrix_344ATERF15;AT4G18450Not availableUpstream-35
Matrix_345POC1Not availableDownstream6281
Matrix_355ERF10;ERF11Not availableUpstream-966
Matrix_406ATERF-7Not availableUpstream-36
Upstream-1032
Matrix_407AP1Not availableIntron427
Matrix_409DEAR3Not availableUpstream-966
Matrix_462ATERF-8Not availableUpstream-36
Upstream-967
Matrix_48PINot availableUpstream-23
Upstream-215
Matrix_484ATERF13Not availableUpstream-35
Matrix_488ABF1Not availableDownstream6279
Matrix_493AT1G22985;AT1G71130Not availableUpstream-966
Matrix_5AT5G51190;ERF104Not availableUpstream-35
Matrix_50ATERF14;AT5G43410Not availableUpstream-966
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-966
Matrix_91CRF3Not availableUpstream-966
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACDownstream6336
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream6255
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisDownstream6184
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream6255
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream6255
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream6286
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream6232
Upstream-291
Upstream-299
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-290
Upstream-298
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream6255
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-109
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-114
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-294
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneDownstream6235
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream6308
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterUpstream-296
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-165
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-1732