View conserved binding sites


Gene
CM00006G06090
Description
Probable sulfate transporter 3.3
Alias
MELO3C006505;MELO3C006505T1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-175
Matrix_109GBF3Not availableUpstream-175
Upstream-173
Matrix_113ABI5Not availableUpstream-175
Upstream-173
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-178
Upstream-177
Matrix_120BEE2Not availableUpstream-174
Matrix_122ABF1;AREB2Not availableUpstream-174
Matrix_129ABF1Not availableUpstream-174
Matrix_134ABF1Not availableUpstream-174
Matrix_14ZCW32;AT5G62610Not availableUpstream-174
Matrix_145GBF4;AT5G44080Not availableUpstream-173
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-178
Matrix_156POC1Not availableUpstream-175
Matrix_192FHY3/FAR1Not availableUpstream-177
Upstream-173
Matrix_194HYH;HY5Not availableUpstream-177
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-174
Matrix_214AP1Not availableUpstream-176
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-177
Matrix_24POC1Not availableUpstream-178
Matrix_247PIF3Not availableUpstream-174
Matrix_264ATAREB1Not availableUpstream-177
Upstream-174
Matrix_296GBF2Not availableUpstream-174
Upstream-173
Matrix_300bZIP68;bZIP16Not availableUpstream-174
Upstream-173
Matrix_301PIL5Not availableUpstream-173
Matrix_331GBF1Not availableUpstream-175
Upstream-173
Matrix_332SPT;ALCNot availableUpstream-174
Matrix_338AP2Not availableUpstream-177
Matrix_345POC1Not availableUpstream-178
Upstream-177
Matrix_356PRR5Not availableUpstream-181
Matrix_389ILR3Not availableUpstream-174
Matrix_403BZR1Not availableUpstream-176
Matrix_438AtbZIP63Not availableUpstream-174
Matrix_443AGL15Not availableUpstream-176
Matrix_480BES1Not availableUpstream-175
Matrix_488ABF1Not availableUpstream-182
Matrix_55PIF3Not availableUpstream-175
Matrix_7PIF4Not availableUpstream-174
Matrix_77PRR5Not availableUpstream-175
Matrix_80BIM1Not availableUpstream-173
Motif_120ABRETAEMABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGCUpstream-174
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-172
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-187
Upstream-172
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationIntron3412
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-174
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-173
Upstream-172
Motif_244ABRE-like binding site motifNot availableUpstream-174
Upstream-172
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-172
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-174
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-172
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationIntron3414
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-173
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-1002
Intron3412
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-179
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-174
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-174
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-394
Upstream-393
Upstream-392
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-174
Upstream-171
Motif_638ABRE binding site motifNot availableUpstream-174
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-175
Motif_71WRKY63ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in ArabidopsisUpstream-183
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-171
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-175