Matrix_119 | RRTF1 | Not available | Upstream | -400 |
Matrix_129 | ABF1 | Not available | Upstream | -558 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -1822 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -1598 |
Matrix_160 | RVE1 | Not available | Upstream | -258 |
| | | Upstream | -259 |
Matrix_166 | TGA4 | Not available | Upstream | -297 |
Matrix_186 | FHY3 | Not available | Upstream | -393 |
| | | Upstream | -1985 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -292 |
| | | Upstream | -293 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -555 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -398 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -559 |
Matrix_224 | ERF1 | Not available | Upstream | -1765 |
Matrix_232 | TCP23 | Not available | Upstream | -475 |
| | | Upstream | -1821 |
Matrix_261 | ATERF-1 | Not available | Upstream | -1766 |
Matrix_288 | RAP2.3 | Not available | Upstream | -400 |
Matrix_297 | TCP15 | Not available | Upstream | -472 |
| | | Upstream | -475 |
Matrix_313 | ATMYB65;MYB33 | Not available | Upstream | -218 |
Matrix_338 | AP2 | Not available | Upstream | -555 |
Matrix_348 | AT5G51910 | Not available | Upstream | -473 |
| | | Upstream | -474 |
Matrix_356 | PRR5 | Not available | Upstream | -293 |
Matrix_360 | ORA59 | Not available | Upstream | -1766 |
Matrix_399 | TGA1 | Not available | Upstream | -297 |
Matrix_40 | TCP2 | Not available | Upstream | -474 |
Matrix_406 | ATERF-7 | Not available | Upstream | -1764 |
Matrix_42 | AT2G45680 | Not available | Upstream | -473 |
| | | Upstream | -474 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -296 |
Matrix_456 | bZIP60 | Not available | Upstream | -295 |
| | | Upstream | -296 |
Matrix_457 | TGA2 | Not available | Upstream | -298 |
Matrix_462 | ATERF-8 | Not available | Upstream | -1764 |
Matrix_484 | ATERF13 | Not available | Upstream | -1766 |
Matrix_488 | ABF1 | Not available | Upstream | -288 |
| | | Upstream | -557 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -1765 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -297 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1767 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -291 |
Motif_166 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | Upstream | -151 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -559 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -295 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -297 |
Motif_347 | OPAQUE2ZMB32 | opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC) | Upstream | -1207 |
Motif_408 | EVENINGAT | Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock | Upstream | -148 |
| | | Upstream | -258 |
| | | Upstream | -488 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -298 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -98 |
| | | Upstream | -655 |
| | | Upstream | -773 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -560 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -298 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -284 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -295 |
| | | Upstream | -560 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Upstream | -327 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -560 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -492 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -295 |