View conserved binding sites


Gene
CM00005G09060
Description
component response regulator-like
Alias
MELO3C005921;MELO3C005921T1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-400
Matrix_129ABF1Not availableUpstream-558
Matrix_144AT5G08330;AT5G23280Not availableUpstream-1822
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1598
Matrix_160RVE1Not availableUpstream-258
Upstream-259
Matrix_166TGA4Not availableUpstream-297
Matrix_186FHY3Not availableUpstream-393
Upstream-1985
Matrix_192FHY3/FAR1Not availableUpstream-292
Upstream-293
Matrix_194HYH;HY5Not availableUpstream-555
Matrix_196TCP20;AT5G41030Not availableUpstream-398
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-559
Matrix_224ERF1Not availableUpstream-1765
Matrix_232TCP23Not availableUpstream-475
Upstream-1821
Matrix_261ATERF-1Not availableUpstream-1766
Matrix_288RAP2.3Not availableUpstream-400
Matrix_297TCP15Not availableUpstream-472
Upstream-475
Matrix_313ATMYB65;MYB33Not availableUpstream-218
Matrix_338AP2Not availableUpstream-555
Matrix_348AT5G51910Not availableUpstream-473
Upstream-474
Matrix_356PRR5Not availableUpstream-293
Matrix_360ORA59Not availableUpstream-1766
Matrix_399TGA1Not availableUpstream-297
Matrix_40TCP2Not availableUpstream-474
Matrix_406ATERF-7Not availableUpstream-1764
Matrix_42AT2G45680Not availableUpstream-473
Upstream-474
Matrix_438AtbZIP63Not availableUpstream-296
Matrix_456bZIP60Not availableUpstream-295
Upstream-296
Matrix_457TGA2Not availableUpstream-298
Matrix_462ATERF-8Not availableUpstream-1764
Matrix_484ATERF13Not availableUpstream-1766
Matrix_488ABF1Not availableUpstream-288
Upstream-557
Matrix_50ATERF14;AT5G43410Not availableUpstream-1765
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-297
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1767
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-291
Motif_166RAP2.2Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leavesUpstream-151
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-559
Motif_244ABRE-like binding site motifNot availableUpstream-295
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-297
Motif_347OPAQUE2ZMB32opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)Upstream-1207
Motif_408EVENINGATEvening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clockUpstream-148
Upstream-258
Upstream-488
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-298
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-98
Upstream-655
Upstream-773
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-560
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-298
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-284
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-295
Upstream-560
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-327
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-560
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-492
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-295