Matrix_101 | ERF5 | Not available | Upstream | -3 |
| | | Upstream | -138 |
| | | Upstream | -139 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -2 |
| | | Upstream | -137 |
| | | Upstream | -138 |
| | | Upstream | -139 |
Matrix_146 | ORA47 | Not available | Upstream | -138 |
Matrix_151 | ASIL1 | Not available | Upstream | -133 |
| | | Upstream | -134 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -359 |
Matrix_186 | FHY3 | Not available | Upstream | -359 |
Matrix_190 | ATERF1 | Not available | Upstream | -2 |
| | | Upstream | -3 |
| | | Upstream | -134 |
| | | Upstream | -135 |
| | | Upstream | -137 |
| | | Upstream | -138 |
| | | Upstream | -139 |
| | | Upstream | -173 |
Matrix_224 | ERF1 | Not available | Upstream | -139 |
| | | Upstream | -142 |
Matrix_230 | ARR11 | Not available | Upstream | -136 |
Matrix_234 | RAP2.3 | Not available | Upstream | -138 |
| | | Upstream | -141 |
Matrix_252 | RAP2.6 | Not available | Upstream | -137 |
| | | Upstream | -138 |
| | | Upstream | -141 |
Matrix_261 | ATERF-1 | Not available | Upstream | -4 |
Matrix_272 | DEAR4 | Not available | Upstream | -138 |
Matrix_287 | ERF2 | Not available | Upstream | -138 |
| | | Upstream | -139 |
Matrix_288 | RAP2.3 | Not available | Upstream | -139 |
| | | Upstream | -140 |
Matrix_295 | ERF1 | Not available | Upstream | -140 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -139 |
| | | Upstream | -140 |
| | | Upstream | -142 |
| | | Upstream | -143 |
Matrix_334 | AT3G23230 | Not available | Upstream | -139 |
| | | Upstream | -140 |
Matrix_339 | bHLH104 | Not available | Upstream | -359 |
Matrix_343 | AT2G33710 | Not available | Upstream | -138 |
| | | Upstream | -139 |
| | | Upstream | -141 |
| | | Upstream | -142 |
| | | Upstream | -172 |
Matrix_350 | ARR14 | Not available | Upstream | -136 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -139 |
| | | Upstream | -140 |
| | | Upstream | -142 |
| | | Upstream | -143 |
Matrix_360 | ORA59 | Not available | Upstream | -140 |
Matrix_363 | RAP2.3 | Not available | Upstream | -139 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -2 |
| | | Upstream | -139 |
| | | Upstream | -140 |
Matrix_378 | ATERF1 | Not available | Upstream | -138 |
| | | Upstream | -139 |
| | | Upstream | -141 |
| | | Upstream | -142 |
| | | Upstream | -172 |
Matrix_405 | DREB2C | Not available | Upstream | -173 |
Matrix_406 | ATERF-7 | Not available | Upstream | -2 |
| | | Upstream | -140 |
| | | Upstream | -141 |
Matrix_409 | DEAR3 | Not available | Upstream | -4 |
| | | Upstream | -139 |
| | | Upstream | -140 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -139 |
| | | Upstream | -142 |
Matrix_45 | DRN | Not available | Upstream | -140 |
| | | Upstream | -141 |
Matrix_473 | RRTF1 | Not available | Upstream | -138 |
| | | Upstream | -139 |
| | | Upstream | -141 |
| | | Upstream | -142 |
| | | Upstream | -172 |
Matrix_484 | ATERF13 | Not available | Upstream | -140 |
| | | Upstream | -141 |
Matrix_49 | FHY3/FAR1 | Not available | Upstream | -356 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -139 |
| | | Upstream | -140 |
| | | Upstream | -142 |
| | | Upstream | -143 |
Matrix_497 | AP3 | Not available | Upstream | -219 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -139 |
| | | Upstream | -140 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -142 |
| | | Upstream | -143 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -139 |
| | | Upstream | -140 |
| | | Upstream | -142 |
| | | Upstream | -143 |
Matrix_59 | AT4G00238;AT4G00250 | Not available | Upstream | -133 |
| | | Upstream | -134 |
Matrix_77 | PRR5 | Not available | Upstream | -358 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -139 |
| | | Upstream | -140 |
Matrix_91 | CRF3 | Not available | Upstream | -139 |
| | | Upstream | -140 |
| | | Upstream | -142 |
| | | Upstream | -143 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -360 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -141 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -361 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -140 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 2427 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -87 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -151 |
| | | Upstream | -162 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -153 |