View conserved binding sites


Gene
CM00005G05530
Description
No description available
Alias
MELO3C005585;MELO3C005585T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-3
Upstream-138
Upstream-139
Matrix_110ATABI4;AT3G57600Not availableUpstream-2
Upstream-137
Upstream-138
Upstream-139
Matrix_146ORA47Not availableUpstream-138
Matrix_151ASIL1Not availableUpstream-133
Upstream-134
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-359
Matrix_186FHY3Not availableUpstream-359
Matrix_190ATERF1Not availableUpstream-2
Upstream-3
Upstream-134
Upstream-135
Upstream-137
Upstream-138
Upstream-139
Upstream-173
Matrix_224ERF1Not availableUpstream-139
Upstream-142
Matrix_230ARR11Not availableUpstream-136
Matrix_234RAP2.3Not availableUpstream-138
Upstream-141
Matrix_252RAP2.6Not availableUpstream-137
Upstream-138
Upstream-141
Matrix_261ATERF-1Not availableUpstream-4
Matrix_272DEAR4Not availableUpstream-138
Matrix_287ERF2Not availableUpstream-138
Upstream-139
Matrix_288RAP2.3Not availableUpstream-139
Upstream-140
Matrix_295ERF1Not availableUpstream-140
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-139
Upstream-140
Upstream-142
Upstream-143
Matrix_334AT3G23230Not availableUpstream-139
Upstream-140
Matrix_339bHLH104Not availableUpstream-359
Matrix_343AT2G33710Not availableUpstream-138
Upstream-139
Upstream-141
Upstream-142
Upstream-172
Matrix_350ARR14Not availableUpstream-136
Matrix_355ERF10;ERF11Not availableUpstream-139
Upstream-140
Upstream-142
Upstream-143
Matrix_360ORA59Not availableUpstream-140
Matrix_363RAP2.3Not availableUpstream-139
Matrix_374AT5G07580;AT5G61590Not availableUpstream-2
Upstream-139
Upstream-140
Matrix_378ATERF1Not availableUpstream-138
Upstream-139
Upstream-141
Upstream-142
Upstream-172
Matrix_405DREB2CNot availableUpstream-173
Matrix_406ATERF-7Not availableUpstream-2
Upstream-140
Upstream-141
Matrix_409DEAR3Not availableUpstream-4
Upstream-139
Upstream-140
Matrix_426CRF1;CRF2Not availableUpstream-139
Upstream-142
Matrix_45DRNNot availableUpstream-140
Upstream-141
Matrix_473RRTF1Not availableUpstream-138
Upstream-139
Upstream-141
Upstream-142
Upstream-172
Matrix_484ATERF13Not availableUpstream-140
Upstream-141
Matrix_49FHY3/FAR1Not availableUpstream-356
Matrix_493AT1G22985;AT1G71130Not availableUpstream-139
Upstream-140
Upstream-142
Upstream-143
Matrix_497AP3Not availableUpstream-219
Matrix_50ATERF14;AT5G43410Not availableUpstream-139
Upstream-140
Matrix_506DRNL;ATERF-4Not availableUpstream-142
Upstream-143
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-139
Upstream-140
Upstream-142
Upstream-143
Matrix_59AT4G00238;AT4G00250Not availableUpstream-133
Upstream-134
Matrix_77PRR5Not availableUpstream-358
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-139
Upstream-140
Matrix_91CRF3Not availableUpstream-139
Upstream-140
Upstream-142
Upstream-143
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-360
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-141
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-361
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-140
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream2427
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-87
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-151
Upstream-162
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-153