View conserved binding sites


Gene
CM00005G04360
Description
Tripeptidyl-peptidase 2
Alias
MELO3C005471;MELO3C005471T1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-46
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-47
Upstream-48
Matrix_190ATERF1Not availableUpstream-47
Upstream-48
Matrix_224ERF1Not availableUpstream-46
Matrix_243RAP2.12;RAP2.2Not availableUpstream-47
Matrix_252RAP2.6Not availableUpstream-47
Matrix_287ERF2Not availableUpstream-47
Matrix_288RAP2.3Not availableUpstream-46
Matrix_295ERF1Not availableUpstream-47
Matrix_301PIL5Not availableUpstream-59
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-46
Matrix_334AT3G23230Not availableUpstream-47
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-62
Matrix_343AT2G33710Not availableUpstream-47
Matrix_355ERF10;ERF11Not availableUpstream-46
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-47
Matrix_378ATERF1Not availableUpstream-47
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-86
Matrix_403BZR1Not availableUpstream-62
Matrix_406ATERF-7Not availableUpstream-45
Matrix_409DEAR3Not availableUpstream-46
Upstream-86
Matrix_426CRF1;CRF2Not availableUpstream-47
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-46
Matrix_462ATERF-8Not availableUpstream-45
Matrix_467RAV1Not availableUpstream-62
Matrix_473RRTF1Not availableUpstream-47
Matrix_477RAV1Not availableUpstream-62
Matrix_493AT1G22985;AT1G71130Not availableUpstream-47
Matrix_50ATERF14;AT5G43410Not availableUpstream-46
Matrix_506DRNL;ATERF-4Not availableUpstream-47
Upstream-48
Matrix_517ERF12Not availableUpstream-47
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-46
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-47
Matrix_91CRF3Not availableUpstream-47
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-66
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-47
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-106
Upstream-266
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-66
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-20