View conserved binding sites


Gene
CM00004G02140
Description
Pescadillo homolog
Alias
MELO3C004873;MELO3C004873T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-123
Upstream-126
Upstream-129
Matrix_110ATABI4;AT3G57600Not availableUpstream-124
Upstream-130
Matrix_119RRTF1Not availableUpstream-122
Upstream-123
Upstream-125
Upstream-126
Matrix_138RRTF1Not availableUpstream-122
Upstream-125
Matrix_146ORA47Not availableUpstream-126
Matrix_147ERF3;AT1G80580Not availableUpstream-126
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-124
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-124
Upstream-127
Matrix_190ATERF1Not availableUpstream-124
Upstream-126
Upstream-127
Upstream-130
Matrix_224ERF1Not availableUpstream-125
Upstream-126
Upstream-128
Upstream-129
Upstream-132
Matrix_234RAP2.3Not availableUpstream-123
Upstream-126
Upstream-127
Upstream-129
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-123
Matrix_243RAP2.12;RAP2.2Not availableUpstream-127
Upstream-130
Matrix_244DREB2CNot availableUpstream-122
Matrix_252RAP2.6Not availableUpstream-123
Upstream-126
Upstream-129
Matrix_261ATERF-1Not availableUpstream-123
Upstream-126
Matrix_272DEAR4Not availableUpstream-126
Matrix_285DDF1Not availableUpstream-121
Matrix_287ERF2Not availableUpstream-126
Upstream-129
Matrix_288RAP2.3Not availableUpstream-125
Matrix_292FTQ4Not availableUpstream-122
Matrix_295ERF1Not availableUpstream-126
Matrix_312ARF11;MP;ARF6;IAA21;ARF8;ARF4Not availableUpstream-121
Matrix_321HRDNot availableUpstream-123
Upstream-126
Upstream-129
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-122
Upstream-125
Upstream-128
Matrix_334AT3G23230Not availableUpstream-127
Upstream-130
Matrix_343AT2G33710Not availableUpstream-123
Upstream-126
Upstream-129
Matrix_344ATERF15;AT4G18450Not availableUpstream-126
Matrix_355ERF10;ERF11Not availableUpstream-122
Upstream-125
Upstream-128
Matrix_360ORA59Not availableUpstream-126
Upstream-129
Matrix_363RAP2.3Not availableUpstream-125
Matrix_364FLCNot availableIntron5568
Matrix_374AT5G07580;AT5G61590Not availableUpstream-126
Upstream-129
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-123
Upstream-126
Matrix_378ATERF1Not availableUpstream-123
Upstream-126
Upstream-129
Matrix_385DEAR4Not availableUpstream-122
Matrix_394DREB_UNot availableUpstream-122
Matrix_405DREB2CNot availableUpstream-127
Upstream-130
Matrix_406ATERF-7Not availableUpstream-124
Upstream-125
Upstream-127
Upstream-128
Matrix_409DEAR3Not availableUpstream-125
Matrix_426CRF1;CRF2Not availableUpstream-127
Upstream-130
Matrix_448ATERF6Not availableUpstream-128
Matrix_45DRNNot availableUpstream-126
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-122
Upstream-125
Matrix_462ATERF-8Not availableUpstream-121
Upstream-124
Matrix_473RRTF1Not availableUpstream-123
Upstream-126
Upstream-127
Upstream-129
Matrix_478AT1G01250Not availableUpstream-123
Matrix_484ATERF13Not availableUpstream-126
Matrix_493AT1G22985;AT1G71130Not availableUpstream-126
Upstream-129
Matrix_5AT5G51190;ERF104Not availableUpstream-129
Matrix_50ATERF14;AT5G43410Not availableUpstream-125
Upstream-126
Upstream-128
Upstream-129
Matrix_506DRNL;ATERF-4Not availableUpstream-124
Upstream-127
Upstream-130
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-121
Matrix_517ERF12Not availableUpstream-126
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-125
Upstream-128
Matrix_61ATCBF3Not availableUpstream-122
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-123
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-127
Matrix_91CRF3Not availableUpstream-123
Upstream-126
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-173
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-127
Upstream-130
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-123
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-295
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-124
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-124