| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -39 |
| Matrix_190 | ATERF1 | Not available | Upstream | -37 |
| Matrix_396 | AP3 | Not available | Upstream | -98 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -37 |
| Matrix_45 | DRN | Not available | Upstream | -39 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -37 |
| Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -98 |
| Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -98 |
| Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -135 |
| | | Upstream | -160 |
| | | Upstream | -162 |
| | | Upstream | -188 |
| | | Upstream | -233 |
| Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -157 |
| | | Upstream | -162 |
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