View conserved binding sites


Gene
CM00001G05050
Description
Allantoate deiminase
Alias
MELO3C002403;MELO3C002403T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-5
Upstream-45
Matrix_119RRTF1Not availableUpstream-44
Matrix_190ATERF1Not availableUpstream-3
Upstream-46
Matrix_224ERF1Not availableUpstream-4
Upstream-44
Upstream-47
Matrix_243RAP2.12;RAP2.2Not availableUpstream-46
Matrix_261ATERF-1Not availableUpstream-45
Matrix_277RAP2.6Not availableUpstream-4
Matrix_287ERF2Not availableUpstream-5
Upstream-45
Matrix_288RAP2.3Not availableUpstream-44
Matrix_295ERF1Not availableUpstream-5
Upstream-45
Matrix_334AT3G23230Not availableUpstream-6
Upstream-46
Matrix_343AT2G33710Not availableUpstream-5
Upstream-45
Matrix_355ERF10;ERF11Not availableUpstream-44
Matrix_360ORA59Not availableUpstream-45
Matrix_363RAP2.3Not availableUpstream-4
Upstream-44
Matrix_378ATERF1Not availableUpstream-45
Matrix_406ATERF-7Not availableUpstream-43
Matrix_426CRF1;CRF2Not availableUpstream-6
Upstream-46
Matrix_462ATERF-8Not availableUpstream-43
Matrix_473RRTF1Not availableUpstream-45
Matrix_484ATERF13Not availableUpstream-45
Matrix_50ATERF14;AT5G43410Not availableUpstream-4
Upstream-44
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-5
Upstream-45
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-5
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-326
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-327
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-34