Matrix_130 | TCP16 | Not available | Upstream | -1368 |
Matrix_224 | ERF1 | Not available | Upstream | -1580 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1579 |
Matrix_261 | ATERF-1 | Not available | Upstream | -883 |
Matrix_296 | GBF2 | Not available | Upstream | -1923 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1923 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -883 |
Matrix_331 | GBF1 | Not available | Upstream | -1922 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -883 |
Matrix_363 | RAP2.3 | Not available | Upstream | -954 |
Matrix_396 | AP3 | Not available | Upstream | -445 |
| | | Upstream | -508 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -1923 |
Matrix_488 | ABF1 | Not available | Upstream | -1046 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -883 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -883 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -883 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -883 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -1177 |
Motif_13 | E2F-varient binding site motif | A genome-wide identification of E2F-regulated genes in Arabidopsis | Upstream | -1623 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -1158 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -445 |
| | | Upstream | -508 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -1158 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -1158 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -445 |
| | | Upstream | -508 |
Motif_372 | E2FAT | E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression | Upstream | -1623 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -1158 |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | Upstream | -1922 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -1169 |
| | | Upstream | -1733 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -441 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -1169 |
| | | Upstream | -1733 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -1023 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -1177 |