View conserved binding sites


Gene
CM00001G00460
Description
Protein argonaute
Alias
MELO3C001957;MELO3C001957T1
Binding siteNameDescriptionLocationPosition
Matrix_130TCP16Not availableUpstream-1368
Matrix_224ERF1Not availableUpstream-1580
Matrix_252RAP2.6Not availableUpstream-1579
Matrix_261ATERF-1Not availableUpstream-883
Matrix_296GBF2Not availableUpstream-1923
Matrix_300bZIP68;bZIP16Not availableUpstream-1923
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-883
Matrix_331GBF1Not availableUpstream-1922
Matrix_355ERF10;ERF11Not availableUpstream-883
Matrix_363RAP2.3Not availableUpstream-954
Matrix_396AP3Not availableUpstream-445
Upstream-508
Matrix_438AtbZIP63Not availableUpstream-1923
Matrix_488ABF1Not availableUpstream-1046
Matrix_493AT1G22985;AT1G71130Not availableUpstream-883
Matrix_50ATERF14;AT5G43410Not availableUpstream-883
Matrix_506DRNL;ATERF-4Not availableUpstream-883
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-883
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-1177
Motif_13E2F-varient binding site motifA genome-wide identification of E2F-regulated genes in ArabidopsisUpstream-1623
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-1158
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-445
Upstream-508
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-1158
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-1158
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-445
Upstream-508
Motif_372E2FATE2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expressionUpstream-1623
Motif_419MYB4 binding site motifNot availableUpstream-1158
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-1922
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1169
Upstream-1733
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-441
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-1169
Upstream-1733
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-1023
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-1177