View conserved binding sites


Gene
BR10G20580
Description
Chalcone synthase
Alias
Bra008792;Bra008792
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-424
Matrix_109GBF3Not availableUpstream-1418
Matrix_113ABI5Not availableUpstream-1462
Matrix_122ABF1;AREB2Not availableUpstream-1460
Upstream-1461
Matrix_129ABF1Not availableUpstream-1461
Matrix_134ABF1Not availableUpstream-1462
Matrix_14ZCW32;AT5G62610Not availableUpstream-425
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1415
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-140
Upstream-141
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-422
Matrix_24POC1Not availableUpstream-1415
Matrix_25AP3Not availableUpstream-127
Matrix_264ATAREB1Not availableUpstream-1461
Matrix_331GBF1Not availableUpstream-1418
Matrix_332SPT;ALCNot availableUpstream-840
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-426
Matrix_449BIM2Not availableUpstream-425
Matrix_452MYB46Not availableUpstream-1425
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-140
Upstream-141
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-418
Upstream-425
Upstream-427
Upstream-865
Motif_141BP5OSWXOsBP-5 (a MYC protein) binding site in Wx promoterUpstream-174
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-426
Upstream-1462
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneUpstream-155
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-144
Upstream-256
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-102
Upstream-103
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-175
Upstream-426
Upstream-1431
Upstream-1461
Upstream-1462
Motif_244ABRE-like binding site motifNot availableUpstream-1418
Upstream-1462
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-144
Motif_268BOXICHSBox I consensus sequence in the promoters of mustard and parsley chs genes; Essential for light regulationUpstream-144
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-148
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-144
Upstream-148
Motif_323MYB1LEPRTomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))Upstream-383
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-426
Upstream-840
Motif_349QARBNEXTAQAR (quantitative activator region) in promoter region of Brassica napus extA extensin geneUpstream-175
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-156
Upstream-982
Motif_419MYB4 binding site motifNot availableUpstream-144
Upstream-256
Upstream-383
Upstream-488
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-175
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-841
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-176
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-125
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-144
Motif_668TCA1MOTIFTCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoterUpstream-108
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-125
Motif_691HBOXCONSENSUSPVCHSH-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigenUpstream-135
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-176