| Matrix_113 | ABI5 | Not available | Upstream | -255 |
| Matrix_122 | ABF1;AREB2 | Not available | Upstream | -255 |
| Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -257 |
| Matrix_165 | KNAT1 | Not available | Upstream | -138 |
| Matrix_194 | HYH;HY5 | Not available | Upstream | -253 |
| Matrix_214 | AP1 | Not available | Upstream | -254 |
| Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -257 |
| Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | Upstream | -1860 |
| Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -256 |
| Matrix_338 | AP2 | Not available | Upstream | -253 |
| Matrix_356 | PRR5 | Not available | Upstream | -253 |
| Matrix_403 | BZR1 | Not available | Upstream | -254 |
| Matrix_418 | KNAT6;KNAT2 | Not available | Upstream | -137 |
| Matrix_443 | AGL15 | Not available | Upstream | -254 |
| Matrix_488 | ABF1 | Not available | Upstream | -248 |
| | | Upstream | -255 |
| Matrix_55 | PIF3 | Not available | Upstream | -255 |
| Matrix_77 | PRR5 | Not available | Upstream | -254 |
| Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -173 |
| Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -161 |
| Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -470 |
| | | Upstream | -475 |
| | | Upstream | -690 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -255 |
| | | Upstream | -257 |
| Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -411 |
| Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -257 |
Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench