Matrix_113 | ABI5 | Not available | Upstream | -1133 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -370 |
Matrix_119 | RRTF1 | Not available | Upstream | -941 |
| | | Upstream | -942 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -1134 |
Matrix_129 | ABF1 | Not available | Upstream | -1134 |
Matrix_138 | RRTF1 | Not available | Upstream | -941 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -1135 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -942 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -941 |
Matrix_156 | POC1 | Not available | Upstream | -1133 |
Matrix_186 | FHY3 | Not available | Upstream | -1096 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -374 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -1131 |
Matrix_224 | ERF1 | Not available | Upstream | -941 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -941 |
Matrix_260 | CAMTA3 | Not available | Upstream | -374 |
Matrix_261 | ATERF-1 | Not available | Upstream | -941 |
Matrix_264 | ATAREB1 | Not available | Upstream | -1131 |
| | | Upstream | -1134 |
Matrix_288 | RAP2.3 | Not available | Upstream | -941 |
Matrix_295 | ERF1 | Not available | Upstream | -942 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1134 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -941 |
| | | Upstream | -942 |
Matrix_332 | SPT;ALC | Not available | Upstream | -375 |
| | | Upstream | -1134 |
Matrix_334 | AT3G23230 | Not available | Upstream | -941 |
Matrix_338 | AP2 | Not available | Upstream | -1131 |
Matrix_343 | AT2G33710 | Not available | Upstream | -941 |
Matrix_345 | POC1 | Not available | Upstream | -370 |
| | | Upstream | -1468 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -941 |
| | | Upstream | -942 |
Matrix_360 | ORA59 | Not available | Upstream | -942 |
Matrix_363 | RAP2.3 | Not available | Upstream | -941 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -941 |
Matrix_381 | ATHB9 | Not available | Upstream | -1135 |
Matrix_396 | AP3 | Not available | Upstream | -714 |
| | | Upstream | -725 |
Matrix_406 | ATERF-7 | Not available | Upstream | -942 |
Matrix_409 | DEAR3 | Not available | Upstream | -941 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -941 |
| | | Upstream | -942 |
Matrix_45 | DRN | Not available | Upstream | -942 |
Matrix_459 | ATHB9;CNA;PHB;ATHB-8;REV | Not available | Upstream | -1135 |
Matrix_462 | ATERF-8 | Not available | Upstream | -942 |
Matrix_480 | BES1 | Not available | Upstream | -338 |
| | | Upstream | -1133 |
Matrix_484 | ATERF13 | Not available | Upstream | -942 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -941 |
| | | Upstream | -942 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -941 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -941 |
| | | Upstream | -942 |
Matrix_517 | ERF12 | Not available | Upstream | -942 |
Matrix_55 | PIF3 | Not available | Upstream | -1133 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -941 |
| | | Upstream | -942 |
Matrix_7 | PIF4 | Not available | Upstream | -1134 |
| | | Upstream | -1244 |
Matrix_77 | PRR5 | Not available | Upstream | -1133 |
Matrix_84 | AtGRF6 | Not available | Upstream | -941 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -941 |
Matrix_91 | CRF3 | Not available | Upstream | -941 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1135 |
| | | Upstream | -1243 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -1039 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -1039 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -1133 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -943 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -376 |
| | | Upstream | -526 |
| | | Upstream | -1098 |
| | | Upstream | -1100 |
| | | Upstream | -1215 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -1039 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -714 |
| | | Upstream | -725 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -1134 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -839 |
| | | Upstream | -869 |