View conserved binding sites


Gene
BR09G06410
Description
Nucleoside diphosphate kinase
Alias
Bra035848;Bra035848
Binding siteNameDescriptionLocationPosition
Matrix_113ABI5Not availableUpstream-1133
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-370
Matrix_119RRTF1Not availableUpstream-941
Upstream-942
Matrix_122ABF1;AREB2Not availableUpstream-1134
Matrix_129ABF1Not availableUpstream-1134
Matrix_138RRTF1Not availableUpstream-941
Matrix_145GBF4;AT5G44080Not availableUpstream-1135
Matrix_147ERF3;AT1G80580Not availableUpstream-942
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-941
Matrix_156POC1Not availableUpstream-1133
Matrix_186FHY3Not availableUpstream-1096
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-374
Matrix_192FHY3/FAR1Not availableUpstream-1131
Matrix_224ERF1Not availableUpstream-941
Matrix_243RAP2.12;RAP2.2Not availableUpstream-941
Matrix_260CAMTA3Not availableUpstream-374
Matrix_261ATERF-1Not availableUpstream-941
Matrix_264ATAREB1Not availableUpstream-1131
Upstream-1134
Matrix_288RAP2.3Not availableUpstream-941
Matrix_295ERF1Not availableUpstream-942
Matrix_300bZIP68;bZIP16Not availableUpstream-1134
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-941
Upstream-942
Matrix_332SPT;ALCNot availableUpstream-375
Upstream-1134
Matrix_334AT3G23230Not availableUpstream-941
Matrix_338AP2Not availableUpstream-1131
Matrix_343AT2G33710Not availableUpstream-941
Matrix_345POC1Not availableUpstream-370
Upstream-1468
Matrix_355ERF10;ERF11Not availableUpstream-941
Upstream-942
Matrix_360ORA59Not availableUpstream-942
Matrix_363RAP2.3Not availableUpstream-941
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-941
Matrix_381ATHB9Not availableUpstream-1135
Matrix_396AP3Not availableUpstream-714
Upstream-725
Matrix_406ATERF-7Not availableUpstream-942
Matrix_409DEAR3Not availableUpstream-941
Matrix_426CRF1;CRF2Not availableUpstream-941
Upstream-942
Matrix_45DRNNot availableUpstream-942
Matrix_459ATHB9;CNA;PHB;ATHB-8;REVNot availableUpstream-1135
Matrix_462ATERF-8Not availableUpstream-942
Matrix_480BES1Not availableUpstream-338
Upstream-1133
Matrix_484ATERF13Not availableUpstream-942
Matrix_493AT1G22985;AT1G71130Not availableUpstream-941
Upstream-942
Matrix_50ATERF14;AT5G43410Not availableUpstream-941
Matrix_506DRNL;ATERF-4Not availableUpstream-941
Upstream-942
Matrix_517ERF12Not availableUpstream-942
Matrix_55PIF3Not availableUpstream-1133
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-941
Upstream-942
Matrix_7PIF4Not availableUpstream-1134
Upstream-1244
Matrix_77PRR5Not availableUpstream-1133
Matrix_84AtGRF6Not availableUpstream-941
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-941
Matrix_91CRF3Not availableUpstream-941
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1135
Upstream-1243
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-1039
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1039
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-1133
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-943
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-376
Upstream-526
Upstream-1098
Upstream-1100
Upstream-1215
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-1039
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-714
Upstream-725
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-1134
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-839
Upstream-869