View conserved binding sites


Gene
BR07G31390
Description
Dehydrin ERD14
Alias
Bra015779;Bra015779
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-800
Matrix_113ABI5Not availableUpstream-802
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-913
Matrix_130TCP16Not availableUpstream-889
Matrix_134ABF1Not availableUpstream-802
Matrix_144AT5G08330;AT5G23280Not availableUpstream-889
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-1839
Matrix_192FHY3/FAR1Not availableUpstream-802
Matrix_196TCP20;AT5G41030Not availableUpstream-887
Matrix_216TCP16Not availableUpstream-889
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-913
Matrix_247PIF3Not availableUpstream-916
Matrix_264ATAREB1Not availableUpstream-798
Upstream-801
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-889
Matrix_285DDF1Not availableUpstream-877
Upstream-1645
Matrix_292FTQ4Not availableUpstream-1646
Matrix_294MEE35Not availableUpstream-891
Matrix_296GBF2Not availableUpstream-916
Matrix_300bZIP68;bZIP16Not availableUpstream-916
Matrix_338AP2Not availableUpstream-652
Upstream-798
Matrix_345POC1Not availableUpstream-913
Matrix_348AT5G51910Not availableUpstream-889
Matrix_356PRR5Not availableUpstream-794
Matrix_385DEAR4Not availableUpstream-878
Matrix_387ORA47Not availableUpstream-688
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-689
Upstream-1839
Matrix_40TCP2Not availableUpstream-889
Matrix_403BZR1Not availableUpstream-799
Matrix_42AT2G45680Not availableUpstream-889
Matrix_443AGL15Not availableUpstream-799
Matrix_478AT1G01250Not availableUpstream-879
Matrix_507TCP3Not availableUpstream-890
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-877
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-879
Matrix_92AT1G33760Not availableUpstream-878
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-221
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-802
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-801
Upstream-802
Upstream-815
Upstream-848
Upstream-916
Upstream-1942
Upstream-1943
Motif_244ABRE-like binding site motifNot availableUpstream-276
Upstream-802
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-762
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-135
Upstream-1943
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-276
Upstream-802
Upstream-871
Upstream-1015
Upstream-1048
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-762
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-280
Upstream-878
Upstream-1645
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-689
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-879
Upstream-1645
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-878
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-915
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-879
Upstream-1645
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-277
Upstream-803
Upstream-915
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-879
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-752
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-752
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-277
Upstream-803