Matrix_104 | PI | Not available | Upstream | -800 |
Matrix_113 | ABI5 | Not available | Upstream | -802 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -913 |
Matrix_130 | TCP16 | Not available | Upstream | -889 |
Matrix_134 | ABF1 | Not available | Upstream | -802 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -889 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -1839 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -802 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -887 |
Matrix_216 | TCP16 | Not available | Upstream | -889 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -913 |
Matrix_247 | PIF3 | Not available | Upstream | -916 |
Matrix_264 | ATAREB1 | Not available | Upstream | -798 |
| | | Upstream | -801 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -889 |
Matrix_285 | DDF1 | Not available | Upstream | -877 |
| | | Upstream | -1645 |
Matrix_292 | FTQ4 | Not available | Upstream | -1646 |
Matrix_294 | MEE35 | Not available | Upstream | -891 |
Matrix_296 | GBF2 | Not available | Upstream | -916 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -916 |
Matrix_338 | AP2 | Not available | Upstream | -652 |
| | | Upstream | -798 |
Matrix_345 | POC1 | Not available | Upstream | -913 |
Matrix_348 | AT5G51910 | Not available | Upstream | -889 |
Matrix_356 | PRR5 | Not available | Upstream | -794 |
Matrix_385 | DEAR4 | Not available | Upstream | -878 |
Matrix_387 | ORA47 | Not available | Upstream | -688 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -689 |
| | | Upstream | -1839 |
Matrix_40 | TCP2 | Not available | Upstream | -889 |
Matrix_403 | BZR1 | Not available | Upstream | -799 |
Matrix_42 | AT2G45680 | Not available | Upstream | -889 |
Matrix_443 | AGL15 | Not available | Upstream | -799 |
Matrix_478 | AT1G01250 | Not available | Upstream | -879 |
Matrix_507 | TCP3 | Not available | Upstream | -890 |
Matrix_515 | ddf2;ATCBF3;CBF1;CBF4 | Not available | Upstream | -877 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Upstream | -879 |
Matrix_92 | AT1G33760 | Not available | Upstream | -878 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -221 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -802 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -801 |
| | | Upstream | -802 |
| | | Upstream | -815 |
| | | Upstream | -848 |
| | | Upstream | -916 |
| | | Upstream | -1942 |
| | | Upstream | -1943 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -276 |
| | | Upstream | -802 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -762 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -135 |
| | | Upstream | -1943 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -276 |
| | | Upstream | -802 |
| | | Upstream | -871 |
| | | Upstream | -1015 |
| | | Upstream | -1048 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -762 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -280 |
| | | Upstream | -878 |
| | | Upstream | -1645 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -689 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -879 |
| | | Upstream | -1645 |
Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | Upstream | -878 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -915 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -879 |
| | | Upstream | -1645 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -277 |
| | | Upstream | -803 |
| | | Upstream | -915 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Upstream | -879 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -752 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -752 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -277 |
| | | Upstream | -803 |